{"id":"W3199048638","doi":"10.1093/ve/veab079","title":"Genomic analysis of human noroviruses using combined Illumina–Nanopore data","year":2021,"lang":"en","type":"article","venue":"Virus Evolution","topic":"Viral gastroenteritis research and epidemiology","field":"Medicine","cited_by":17,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Ottawa; Health Canada","funders":"Health Canada","keywords":"Nanopore sequencing; Amplicon; Metagenomics; Genome; Computational biology; Deep sequencing; Biology; Whole genome sequencing; Genetics; Illumina dye sequencing; Genomics; DNA sequencing; Gene; Polymerase chain reaction","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003542634,0.0004316354,0.0005762222,0.001052682,0.0005164854,0.0006680447,0.000345651,0.0003848827,0.002737236],"category_scores_gemma":[0.0007709247,0.0002610559,0.000550593,0.00102621,0.0002229125,0.0002732411,0.0005207746,0.0005628006,0.001071238],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0004911255,"about_ca_system_score_gemma":0.0008240262,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.009094266,"about_ca_topic_score_gemma":0.03010937,"domain_scores_codex":[0.9994645,0.0000581665,0.00002665074,0.000191949,0.0001722084,0.0000866409],"domain_scores_gemma":[0.9996431,0.00007541124,0.0000521286,0.00005091327,0.0001418634,0.00003669199],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0004402294,0.00006491427,0.01976552,0.0006082091,0.0002363698,0.0002129649,0.0004587477,0.001771645,0.9314963,0.0008391368,0.001923344,0.04218269],"study_design_scores_gemma":[0.00003633213,0.0004258996,0.2294598,0.0001878137,0.0004896197,0.001189358,0.0007646055,0.01499254,0.6627471,0.001995737,0.0875646,0.0001465944],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.7403609,0.005528303,0.1204899,0.0004174763,0.000179232,0.0003147738,0.1179224,0.001474639,0.01331248],"genre_scores_gemma":[0.6334137,0.002862209,0.2473896,0.0006803262,0.00007609992,0.0003439735,0.1079207,0.0005194349,0.006793958],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.009094266,"threshold_uncertainty_score":0.01808268,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.1245829875354743,"score_gpt":0.3904110750304568,"score_spread":0.2658280874949825,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}