{"id":"W3199048638","doi":"10.1093/ve/veab079","title":"Genomic analysis of human noroviruses using combined Illumina–Nanopore data","year":2021,"lang":"en","type":"article","venue":"Virus Evolution","topic":"Viral gastroenteritis research and epidemiology","field":"Medicine","cited_by":17,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Ottawa; Health Canada","funders":"Health Canada","keywords":"Nanopore sequencing; Amplicon; Metagenomics; Genome; Computational biology; Deep sequencing; Biology; Whole genome sequencing; Genetics; Illumina dye sequencing; Genomics; DNA sequencing; Gene; Polymerase chain reaction","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003411932,0.0001034657,0.0005265148,0.0003125017,0.00009114968,0.000007276496,0.0001684539,0.00007766971,0.0003604984],"category_scores_gemma":[0.0003929414,0.0001016674,0.0001397292,0.000656684,0.0001643727,0.0001019013,0.0002694259,0.0001314149,0.00001431418],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001749924,"about_ca_system_score_gemma":0.0001580554,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002308534,"about_ca_topic_score_gemma":0.003163544,"domain_scores_codex":[0.9985539,0.0001782294,0.0004072486,0.0003562722,0.0001980395,0.0003063023],"domain_scores_gemma":[0.9987535,0.00001814007,0.0001289182,0.0008080691,0.0001691014,0.0001222449],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0001302825,0.0001378519,0.3204619,0.0000367035,0.0005627216,0.00004741522,0.00001832612,0.00008419571,0.6773208,0.0001555655,0.0007593628,0.0002849177],"study_design_scores_gemma":[0.001169269,0.0004641878,0.958734,0.00006305563,0.001508489,0.00004016487,0.0001486084,0.03103491,0.005963052,0.0001320602,0.0006291849,0.0001130705],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9963628,0.0006626613,0.002145031,0.000157394,0.00006171344,0.0001064972,0.0002816572,0.00002301644,0.0001992095],"genre_scores_gemma":[0.9964028,0.0001283177,0.001589525,0.0001317927,0.00007525128,0.000002407371,0.001507213,0.0000122206,0.0001505008],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.6713577,"threshold_uncertainty_score":0.4145874,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.1245829875354743,"score_gpt":0.3904110750304568,"score_spread":0.2658280874949825,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}