{"id":"W3199244974","doi":"10.1016/j.syapm.2021.126251","title":"Phylogenomics and molecular signatures support division of the order Neisseriales into emended families Neisseriaceae and Chromobacteriaceae and three new families Aquaspirillaceae fam. nov., Chitinibacteraceae fam. nov., and Leeiaceae fam. nov.","year":2021,"lang":"en","type":"article","venue":"Systematic and Applied Microbiology","topic":"Microbial Metabolism and Applications","field":"Biochemistry, Genetics and Molecular Biology","cited_by":28,"is_retracted":false,"has_abstract":false,"ca_institutions":"McMaster University","funders":"Natural Sciences and Engineering Research Council of Canada; Ontario Research Foundation","keywords":"Biology; Clade; Phylogenomics; Evolutionary biology; Phylogenetic tree; Phylogenetics; Genome; Taxonomy (biology); Zoology; Genetics; Gene","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0009784185,0.0007802203,0.0007133312,0.001797706,0.0007899763,0.001250372,0.0003675412,0.0007060512,0.002744308],"category_scores_gemma":[0.001849602,0.0001922623,0.0006830267,0.002260248,0.0006160467,0.0008958034,0.0009825031,0.0009764796,0.001788466],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0005371525,"about_ca_system_score_gemma":0.0006784407,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002457736,"about_ca_topic_score_gemma":0.003358916,"domain_scores_codex":[0.9996177,0.00005504893,0.00003475735,0.000126323,0.00008782242,0.00007822642],"domain_scores_gemma":[0.9984201,0.0002507458,0.0004648802,0.0002471863,0.000383269,0.0002338519],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.00119477,0.0002361661,0.282023,0.0008201863,0.0006031605,0.0005169797,0.001387739,0.001467564,0.4792908,0.002967798,0.001387906,0.228104],"study_design_scores_gemma":[0.00003212235,0.0006328801,0.9237947,0.000196744,0.0005339906,0.002338881,0.001729131,0.005433526,0.02296299,0.003724048,0.03854382,0.00007709095],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9145938,0.01027326,0.03725951,0.001184451,0.0001666162,0.0002212554,0.008545886,0.000984692,0.02677069],"genre_scores_gemma":[0.9495558,0.003745734,0.03288278,0.0009854296,0.0000741755,0.00007833867,0.008293285,0.0001240881,0.004260512],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.002744308,"threshold_uncertainty_score":0.009180665,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.004520431967933389,"score_gpt":0.2053909874912951,"score_spread":0.2008705555233617,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}