{"id":"W3199586604","doi":"10.1186/s40168-021-01146-2","title":"Cooperation between host immunity and the gut bacteria is essential for helminth-evoked suppression of colitis","year":2021,"lang":"en","type":"article","venue":"Microbiome","topic":"Gut microbiota and health","field":"Biochemistry, Genetics and Molecular Biology","cited_by":45,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Calgary","funders":"Natural Sciences and Engineering Research Council of Canada; Canadian Institutes of Health Research; International Microbiome Centre, University of Calgary; University of Calgary; Cumming School of Medicine, University of Calgary; Alberta Innovates; Canterbury Medical Research Foundation; Canadian Association of Gastroenterology","keywords":"Biology; Lachnospiraceae; Colitis; Gut flora; Microbiology; Feces; Microbiome; Butyrate; Metabolome; Inflammatory bowel disease; Immunology; Hymenolepis diminuta; Short-chain fatty acid; Bacteria; Helminths; Firmicutes; Disease; Cestoda; Biochemistry; Internal medicine; Metabolite; Medicine","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001588878,0.0003887746,0.0004506419,0.0001990237,0.0001879734,0.0004225528,0.0002280646,0.0003415012,0.002210336],"category_scores_gemma":[0.0001547151,0.0001814375,0.0002770126,0.0001031904,0.0003104678,0.0001620773,0.000393809,0.000606037,0.000651069],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001825808,"about_ca_system_score_gemma":0.0002156108,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0002349171,"about_ca_topic_score_gemma":0.0004440029,"domain_scores_codex":[0.9997084,0.00005519628,0.00002192698,0.00006704673,0.00005973032,0.00008776097],"domain_scores_gemma":[0.9996118,0.00003400067,0.0001260308,0.00004626706,0.00003372439,0.0001481672],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0003297101,0.00005228148,0.0005218012,0.0000646967,0.000005829987,0.00007376802,0.00000774715,0.00001851268,0.9978454,0.00004160169,0.0000372661,0.001001353],"study_design_scores_gemma":[0.0001132178,0.002611884,0.06842277,0.00006486406,0.000056762,0.0009729764,0.0001619499,0.001036698,0.9217902,0.0002601525,0.00449494,0.00001361931],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9919036,0.003190125,0.002043975,0.0002154457,0.00006182992,0.0000492152,0.0004659644,0.0001920676,0.001877715],"genre_scores_gemma":[0.9959244,0.0006805887,0.001251699,0.0000654068,0.00002211358,0.0000418961,0.0002418459,0.0000165491,0.001755561],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.002210336,"threshold_uncertainty_score":0.007394373,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.008752867373271153,"score_gpt":0.2635739908942799,"score_spread":0.2548211235210087,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}