{"id":"W3199586604","doi":"10.1186/s40168-021-01146-2","title":"Cooperation between host immunity and the gut bacteria is essential for helminth-evoked suppression of colitis","year":2021,"lang":"en","type":"article","venue":"Microbiome","topic":"Gut microbiota and health","field":"Biochemistry, Genetics and Molecular Biology","cited_by":45,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Calgary","funders":"Natural Sciences and Engineering Research Council of Canada; Canadian Institutes of Health Research; International Microbiome Centre, University of Calgary; University of Calgary; Cumming School of Medicine, University of Calgary; Alberta Innovates; Canterbury Medical Research Foundation; Canadian Association of Gastroenterology","keywords":"Biology; Lachnospiraceae; Colitis; Gut flora; Microbiology; Feces; Microbiome; Butyrate; Metabolome; Inflammatory bowel disease; Immunology; Hymenolepis diminuta; Short-chain fatty acid; Bacteria; Helminths; Firmicutes; Disease; Cestoda; Biochemistry; Internal medicine; Metabolite; Medicine","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001792042,0.0001015582,0.0001895117,0.00002079697,0.0001547296,0.00003241992,0.00009941515,0.0001332847,0.00006100734],"category_scores_gemma":[0.00003171419,0.0000802826,0.00007062942,0.00006270698,0.0001635728,0.000003702126,0.0001350196,0.00005320351,0.000002296741],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000007977973,"about_ca_system_score_gemma":0.0001042627,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000069594,"about_ca_topic_score_gemma":0.00004103716,"domain_scores_codex":[0.9992839,0.0001060727,0.0002114065,0.0002054889,0.00002816104,0.0001650398],"domain_scores_gemma":[0.9994342,0.00002480733,0.000078754,0.0002578291,0.0001679782,0.00003646476],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001763868,0.00002695367,0.0002212509,0.00008373286,0.00004220208,2.401792e-7,0.0001834267,6.913919e-8,0.9947593,0.00004379024,0.004258573,0.0002041391],"study_design_scores_gemma":[0.001786935,0.00007934053,0.01246951,0.00002663185,0.00003471578,0.00001489855,0.0000606711,0.000002631406,0.946954,0.00001332633,0.03846521,0.0000921555],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9967008,0.0006088493,0.0005877165,0.0008913089,0.0001394912,0.0002946897,0.0007310656,0.000003530175,0.00004259189],"genre_scores_gemma":[0.9963145,0.0002482992,0.0005669561,0.0002655351,0.000140756,0.00001181866,0.001496303,0.00001303157,0.0009427615],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.04780526,"threshold_uncertainty_score":0.3273829,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.008752867373271153,"score_gpt":0.2635739908942799,"score_spread":0.2548211235210087,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}