{"id":"W3199725740","doi":"10.1016/j.cell.2021.08.023","title":"Proteogenomic characterization of pancreatic ductal adenocarcinoma","year":2021,"lang":"en","type":"article","venue":"Cell","topic":"Pancreatic and Hepatic Oncology Research","field":"Medicine","cited_by":599,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Calgary; University of Toronto; Princess Margaret Cancer Centre; University Health Network","funders":"National Institute of Environmental Health Sciences; National Cancer Institute; National Institutes of Health; Rolfe Pancreatic Cancer Foundation","keywords":"Biology; Proteogenomics; Computational biology; Proteomics; Exome sequencing; Carcinogenesis; Pancreatic cancer; microRNA; Cancer research; Adenocarcinoma; Cancer; Bioinformatics; Gene; Genome; Genomics; Genetics; Mutation","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00009850496,0.00006635087,0.0002966465,0.0000459431,0.00002717602,0.000004025586,0.00004091661,0.00006759965,0.0008950444],"category_scores_gemma":[0.00006023108,0.00005919907,0.00005214171,0.0001278789,0.00006331937,0.00002566602,0.00003223148,0.0000942374,0.0001136927],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00003897645,"about_ca_system_score_gemma":0.0003764275,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000008623752,"about_ca_topic_score_gemma":6.720095e-7,"domain_scores_codex":[0.9993201,0.00005096088,0.0001910735,0.0001499109,0.0001361191,0.0001518267],"domain_scores_gemma":[0.9994711,0.00003338183,0.00005885981,0.0002246603,0.0001308193,0.00008112141],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.00005145721,0.0001197485,0.3282575,0.0001820081,0.00002835912,0.0001108785,0.0001468862,3.914652e-8,0.6709539,0.00002796683,0.00003687459,0.00008434658],"study_design_scores_gemma":[0.0008224332,0.0001708101,0.6926028,0.00004070259,0.0001395199,0.0001230757,0.00007374107,0.0001279005,0.3055011,0.00003115703,0.000320497,0.00004623057],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9861597,0.0004140123,0.0001899648,0.0002585704,0.00004521608,0.0003107796,0.000007459138,0.00001330904,0.01260095],"genre_scores_gemma":[0.9881186,0.0001435904,0.0009915007,0.00008044333,0.00009616766,0.0000236045,0.0001023761,0.00001190253,0.01043183],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.3654528,"threshold_uncertainty_score":0.9800109,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02374331833610348,"score_gpt":0.2812574691186198,"score_spread":0.2575141507825163,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}