{"id":"W3199725740","doi":"10.1016/j.cell.2021.08.023","title":"Proteogenomic characterization of pancreatic ductal adenocarcinoma","year":2021,"lang":"en","type":"article","venue":"Cell","topic":"Pancreatic and Hepatic Oncology Research","field":"Medicine","cited_by":599,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Calgary; University of Toronto; Princess Margaret Cancer Centre; University Health Network","funders":"National Institute of Environmental Health Sciences; National Cancer Institute; National Institutes of Health; Rolfe Pancreatic Cancer Foundation","keywords":"Biology; Proteogenomics; Computational biology; Proteomics; Exome sequencing; Carcinogenesis; Pancreatic cancer; microRNA; Cancer research; Adenocarcinoma; Cancer; Bioinformatics; Gene; Genome; Genomics; Genetics; Mutation","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002347038,0.0003177895,0.0002680641,0.00153378,0.0002549804,0.0003618913,0.0001154081,0.0001524056,0.0004741196],"category_scores_gemma":[0.000289119,0.0001013647,0.0002767604,0.001007124,0.0001456276,0.0001636398,0.0003250681,0.0002423114,0.0001726608],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001473951,"about_ca_system_score_gemma":0.0002070945,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0006248778,"about_ca_topic_score_gemma":0.0009000486,"domain_scores_codex":[0.999842,0.00002373814,0.00001332331,0.00003635623,0.00005570778,0.00002881286],"domain_scores_gemma":[0.9998759,0.00001793877,0.00002692811,0.00001506066,0.00004015062,0.00002396952],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.000147435,0.00002573798,0.01030579,0.00008191083,0.00004983485,0.0001789283,0.00006528608,0.0003054566,0.9816861,0.00009208376,0.0001227268,0.006938598],"study_design_scores_gemma":[0.00001690064,0.0003627082,0.4858748,0.0000254061,0.0002209973,0.003416992,0.0004121806,0.01008993,0.4882768,0.000628592,0.01062705,0.00004762285],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9887465,0.001450372,0.005562709,0.00008535516,0.00001302807,0.00004895181,0.003017779,0.00007451543,0.001000659],"genre_scores_gemma":[0.9764223,0.001710941,0.01308675,0.00009109052,0.00001885584,0.00008100708,0.007316116,0.00004159358,0.001231409],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.00153378,"threshold_uncertainty_score":0.00158608,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02374331833610348,"score_gpt":0.2812574691186198,"score_spread":0.2575141507825163,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}