{"id":"W3199785954","doi":"10.1101/2021.09.09.459636","title":"Evolutionary innovations through gain and loss of genes in the ectomycorrhizal Boletales","year":2021,"lang":"en","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"Mycorrhizal Fungi and Plant Interactions","field":"Agricultural and Biological Sciences","cited_by":1,"is_retracted":false,"has_abstract":true,"ca_institutions":"McMaster University","funders":"","keywords":"Biology; Botany; Phylogenetics; Gene; Genetics","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000237195,0.0002626021,0.000235104,0.001121516,0.000269538,0.0007340963,0.0002943647,0.0003213296,0.001253819],"category_scores_gemma":[0.0003595703,0.0001380166,0.0002642225,0.001064619,0.0003517522,0.0004485409,0.0004945778,0.0004441856,0.0003369975],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0004905613,"about_ca_system_score_gemma":0.0001953239,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0005197999,"about_ca_topic_score_gemma":0.0007713995,"domain_scores_codex":[0.9998899,0.00001539916,0.000005632133,0.00004748898,0.00001613,0.00002558813],"domain_scores_gemma":[0.9998109,0.00004955146,0.00006194517,0.00001889113,0.00001848042,0.00004025602],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0004932913,0.00003659167,0.1041616,0.0002496802,0.0001483844,0.0007636074,0.0005712603,0.001593609,0.8627429,0.001118273,0.0001459115,0.027975],"study_design_scores_gemma":[0.00003555188,0.0001595972,0.9550112,0.0000466572,0.000114513,0.001564618,0.0006722446,0.002597682,0.02698487,0.0009700961,0.01180853,0.00003448104],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9968531,0.0006334636,0.001200379,0.0000425767,0.000003538281,0.00000494136,0.0003701339,0.0000401828,0.0008516806],"genre_scores_gemma":[0.9960752,0.0005238363,0.001570369,0.00003871785,0.000007209181,0.00001268802,0.0009249214,0.00002384989,0.0008232928],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001253819,"threshold_uncertainty_score":0.004194438,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01572580469529541,"score_gpt":0.212166809361124,"score_spread":0.1964410046658286,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}