{"id":"W3199906166","doi":"10.17504/protocols.io.bxv5pn86","title":"FindingNemo Library 3: KrazyStarFish (KSF) v1","year":2021,"lang":"en","type":"preprint","venue":"","topic":"Advanced biosensing and bioanalysis techniques","field":"Biochemistry, Genetics and Molecular Biology","cited_by":1,"is_retracted":false,"has_abstract":true,"ca_institutions":"Vancouver Biotech (Canada); University of British Columbia","funders":"Biotechnology and Biological Sciences Research Council","keywords":"Adapter (computing); Transposase; DNA sequencer; Computer science; Protocol (science); Computational biology; DNA; Biology; DNA sequencing; Operating system; Genetics; Genome; Medicine; Transposable element; Gene","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001080054,0.001767339,0.001653175,0.001630035,0.001329504,0.001674539,0.00180261,0.001186019,0.0271126],"category_scores_gemma":[0.001475519,0.001385642,0.001139394,0.001056596,0.0006072992,0.001190302,0.00260012,0.002673705,0.03735508],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0006565442,"about_ca_system_score_gemma":0.001130107,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001057219,"about_ca_topic_score_gemma":0.002069957,"domain_scores_codex":[0.9986988,0.0001045422,0.0001120678,0.0003712956,0.0004440924,0.0002691445],"domain_scores_gemma":[0.9994152,0.00009653279,0.00004921913,0.0002352574,0.0001108248,0.00009303656],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","study_design_scores_codex":[0.000538701,0.0001408929,0.001016375,0.0007540112,0.00007453706,0.0002609175,0.0002633654,0.0003507292,0.9253784,0.00171354,0.01625366,0.05325488],"study_design_scores_gemma":[0.0000417341,0.0001581201,0.001567147,0.00004293309,0.00004324927,0.0005675841,0.00006133282,0.0009082328,0.858831,0.0005969677,0.137126,0.00005568086],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"methods","genre_gemma":"software","genre_scores_codex":[0.1055833,0.001560444,0.7012206,0.0006893626,0.0005285572,0.004293541,0.06283731,0.08980235,0.03348446],"genre_scores_gemma":[0.1183775,0.001692817,0.4832894,0.00131166,0.0001117432,0.006660412,0.2299129,0.04091838,0.1177251],"genre_candidate":"software","genre_consensus":null,"teacher_disagreement_score":0.0271126,"threshold_uncertainty_score":0.09070069,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01026207912046077,"score_gpt":0.2601567590383221,"score_spread":0.2498946799178614,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}