{"id":"W3199949550","doi":"10.1093/aobpla/plab059","title":"Principles of resilient coding for plant ecophysiologists","year":2021,"lang":"en","type":"article","venue":"AoB Plants","topic":"Genetics, Bioinformatics, and Biomedical Research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":30,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Toronto","funders":"University of Hawai'i at Mānoa; University of Hawai'i; National Science Foundation","keywords":"Biology","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000184479,0.0000886064,0.0001444318,0.00002692739,0.00004715323,0.00001061644,0.0001653557,0.0001193144,0.00001291551],"category_scores_gemma":[0.0003922827,0.0000738634,0.00007115647,0.00003468742,0.0000925414,0.000001539779,0.0001508507,0.00004795786,0.000008153314],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000006955095,"about_ca_system_score_gemma":0.0001392573,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000006186333,"about_ca_topic_score_gemma":0.00003346476,"domain_scores_codex":[0.9991086,0.00002411329,0.0002582505,0.0001895724,0.000164793,0.0002546755],"domain_scores_gemma":[0.9994422,0.00004858161,0.00007612626,0.0002392602,0.000104527,0.00008931899],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001933988,0.0001007018,0.001230931,0.000224015,0.00006721215,0.000007839119,0.00006602985,0.0000243794,0.9861034,0.0002280803,0.007140485,0.004613577],"study_design_scores_gemma":[0.0004942462,0.0003018924,0.005483895,0.00004425729,0.000006198499,0.00001317759,0.0001464468,0.0004191095,0.8942596,0.00006691548,0.0986489,0.000115343],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9949132,0.0004042907,0.001037132,0.0001172591,0.0002950532,0.0001981306,0.0005458866,0.000006633979,0.002482451],"genre_scores_gemma":[0.9930681,0.001379436,0.002499308,0.0001492061,0.0001914476,0.00001438642,0.001198781,0.000009092411,0.001490216],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.09184373,"threshold_uncertainty_score":0.3012062,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.04234344229054125,"score_gpt":0.3027835705017848,"score_spread":0.2604401282112436,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}