{"id":"W3199952023","doi":"10.1101/2021.09.23.461508","title":"Oligomerization of the FliF domains suggests a coordinated assembly of the bacterial flagellum MS ring","year":2021,"lang":"en","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":2,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of British Columbia","funders":"Biotechnology and Biological Sciences Research Council; Directorate for Biological Sciences; Centre for Blood Research, University of British Columbia; University of Sheffield","keywords":"Periplasmic space; Flagellum; Ring (chemistry); Biology; Cell biology; Transmembrane domain; Basal body; Cell envelope; Protein structure; Crystallography; Chemistry; Biochemistry; Gene; Escherichia coli","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00008667891,0.0002416439,0.0001637858,0.0002098777,0.0002900831,0.0003547271,0.0002307422,0.0002837191,0.001455419],"category_scores_gemma":[0.0001177115,0.0001251149,0.0003430567,0.0001410019,0.0001672035,0.0004215843,0.000159968,0.0003349214,0.0002773077],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000378683,"about_ca_system_score_gemma":0.0001607026,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0008825555,"about_ca_topic_score_gemma":0.00102735,"domain_scores_codex":[0.9999293,0.00000513279,0.000003224266,0.00002264006,0.00001509546,0.0000245024],"domain_scores_gemma":[0.9999143,0.00001195198,0.00003660184,0.000004424392,0.00001151764,0.0000212046],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"simulation_or_modeling","study_design_scores_codex":[0.0003143376,0.0001728207,0.01448984,0.0001362689,0.00005027243,0.0004355377,0.000166942,0.006889012,0.9710379,0.001898274,0.0006540898,0.00375465],"study_design_scores_gemma":[0.00006704584,0.0003561328,0.08269863,0.00005363821,0.0001238939,0.001026839,0.0007432783,0.3116251,0.5955481,0.002278822,0.005392538,0.00008607584],"study_design_candidate":"simulation_or_modeling","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9952109,0.0002398468,0.003382608,0.0000532044,0.000006336399,0.000006807753,0.00010158,0.00005741903,0.000941435],"genre_scores_gemma":[0.9976382,0.00006399862,0.001723012,0.00002925058,0.000002212434,0.000005351062,0.000226621,0.000009075462,0.0003023111],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001455419,"threshold_uncertainty_score":0.004868865,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.006282307541151482,"score_gpt":0.1986408814452972,"score_spread":0.1923585739041457,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}