{"id":"W3200006128","doi":"10.1101/2021.09.16.21262993","title":"Prognostic and Immunological Significance of ARID1A Status in Endometriosis-Associated Ovarian Carcinoma","year":2021,"lang":"en","type":"preprint","venue":"medRxiv","topic":"Chromatin Remodeling and Cancer","field":"Biochemistry, Genetics and Molecular Biology","cited_by":4,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Alberta; University of Calgary; Vancouver General Hospital; University of British Columbia; Calgary Laboratory Services; BC Cancer Agency","funders":"Medical Research and Materiel Command; National Cancer Institute; Canadian Institutes of Health Research; National Institutes of Health; BC Cancer Foundation; Medical Research Council; Swedish Cancer Foundation; Terry Fox Research Institute; National Center for Research Resources; Cancer Institute NSW; Bundesministerium für Bildung und Forschung; National Institute for Health and Care Research; Horizon 2020 Framework Programme; University of Cambridge; Cancer Research UK; Michael Smith Health Research BC; Université de Montréal; Deutsches Krebsforschungszentrum; Calgary Laboratory Services","keywords":"ARID1A; Clear cell carcinoma; CD8; Endometriosis; Cancer research; Immune system; Oncology; Biology; Internal medicine; Medicine; Carcinoma; Mutation; Immunology; Gene; Genetics","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0008085134,0.0001156462,0.000160261,0.001075246,0.0002573308,0.0003407375,0.000230405,0.000208212,0.0008728823],"category_scores_gemma":[0.002468902,0.00009251919,0.000137662,0.000788258,0.0002988994,0.0002137324,0.0004210803,0.0001525452,0.0001215539],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001925816,"about_ca_system_score_gemma":0.0001720501,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001526121,"about_ca_topic_score_gemma":0.001925262,"domain_scores_codex":[0.9996668,0.00009471226,0.00006148509,0.00005934397,0.00005807728,0.00005960385],"domain_scores_gemma":[0.9987742,0.0003370474,0.0004512877,0.00007611603,0.0001596653,0.0002017098],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.00007401677,0.000003400037,0.998887,0.000003892908,0.000008664267,0.00005133435,0.00001293338,0.00002439932,0.0004350583,0.000004538286,0.00001572656,0.0004790239],"study_design_scores_gemma":[0.000003785118,0.00003226909,0.9987006,0.000003492345,0.00001523341,0.000496025,0.0001099299,0.0002179073,0.0002569248,0.000023617,0.0001386778,0.000001445409],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9993717,0.0002196464,0.00005039818,0.00001155174,0.000001712101,0.000002707048,0.0001548524,0.000001087384,0.0001864806],"genre_scores_gemma":[0.999761,0.00003124536,0.00003950575,0.000003047998,0.000002667267,0.000002262396,0.0001321227,4.343854e-7,0.00002773603],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001526121,"threshold_uncertainty_score":0.004275858,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01760360898310853,"score_gpt":0.2524572262843526,"score_spread":0.2348536173012441,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}