{"id":"W3200006128","doi":"10.1101/2021.09.16.21262993","title":"Prognostic and Immunological Significance of ARID1A Status in Endometriosis-Associated Ovarian Carcinoma","year":2021,"lang":"en","type":"preprint","venue":"medRxiv","topic":"Chromatin Remodeling and Cancer","field":"Biochemistry, Genetics and Molecular Biology","cited_by":4,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Alberta; University of Calgary; Vancouver General Hospital; University of British Columbia; Calgary Laboratory Services; BC Cancer Agency","funders":"Medical Research and Materiel Command; National Cancer Institute; Canadian Institutes of Health Research; National Institutes of Health; BC Cancer Foundation; Medical Research Council; Swedish Cancer Foundation; Terry Fox Research Institute; National Center for Research Resources; Cancer Institute NSW; Bundesministerium für Bildung und Forschung; National Institute for Health and Care Research; Horizon 2020 Framework Programme; University of Cambridge; Cancer Research UK; Michael Smith Health Research BC; Université de Montréal; Deutsches Krebsforschungszentrum; Calgary Laboratory Services","keywords":"ARID1A; Clear cell carcinoma; CD8; Endometriosis; Cancer research; Immune system; Oncology; Biology; Internal medicine; Medicine; Carcinoma; Mutation; Immunology; Gene; Genetics","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003001905,0.0002122462,0.0004054626,0.0000816858,0.00002449656,0.00002719236,0.0001854638,0.0004321693,0.000016436],"category_scores_gemma":[0.001256985,0.0002069233,0.0001028591,0.0001679103,0.0001049881,0.000001395374,0.0004478018,0.0003414131,3.745543e-7],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00004457084,"about_ca_system_score_gemma":0.0003074576,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0004148788,"about_ca_topic_score_gemma":0.0001588631,"domain_scores_codex":[0.9984474,0.0001841579,0.0003850962,0.0005455185,0.0001503177,0.0002875709],"domain_scores_gemma":[0.9991251,0.0000799781,0.0002090275,0.0003995971,0.0001256138,0.00006070307],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.00007392246,0.0002052569,0.5860453,0.0002167663,0.0001290459,0.00002674674,0.0001912623,0.0003481776,0.4096579,0.000008736276,0.00001397765,0.003082972],"study_design_scores_gemma":[0.001185519,0.0002395936,0.90466,0.0002940292,0.00006600295,0.000007374543,0.0001939506,0.0008560107,0.09177338,0.0001096477,0.0002195653,0.0003949391],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9865,0.0125713,0.0002012514,0.00003765945,0.0001785138,0.0002783961,0.00005502523,0.00001050284,0.0001674038],"genre_scores_gemma":[0.9969207,0.002099281,0.0005149293,0.00002930263,0.00004424132,0.00007173088,0.0002529817,0.00002089376,0.00004593693],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.3186147,"threshold_uncertainty_score":0.8438087,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01760360898310853,"score_gpt":0.2524572262843526,"score_spread":0.2348536173012441,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}