{"id":"W3200533947","doi":"10.1101/2021.09.13.460184","title":"Core genes can have higher recombination rates than accessory genes within global microbial populations","year":2021,"lang":"en","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":3,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"National Institutes of Health; York University; Life Sciences Research Foundation","keywords":"Biology; Genome; Genetics; Homologous recombination; Gene; Recombination; Phylogenetic tree; Population; Genome evolution; Comparative genomics; Evolutionary biology; Genomics","routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005421622,0.0002924449,0.0004165429,0.0009310743,0.0002101414,0.0006269657,0.0002631387,0.0003253747,0.0006805061],"category_scores_gemma":[0.001257396,0.0001823558,0.0002037922,0.0006716035,0.000394621,0.0003928574,0.0004497452,0.0004485439,0.0001490464],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002204888,"about_ca_system_score_gemma":0.000109597,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0005288891,"about_ca_topic_score_gemma":0.0006643267,"domain_scores_codex":[0.999768,0.00002756847,0.00001405964,0.0001122055,0.00004755919,0.00003061631],"domain_scores_gemma":[0.9990979,0.000305828,0.0003504025,0.000109835,0.00006749752,0.00006844293],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0002526877,0.00005255795,0.08307773,0.0001232143,0.0001245347,0.00006657533,0.0002745511,0.001902243,0.9012008,0.0004169053,0.00007284683,0.01243538],"study_design_scores_gemma":[0.00003857834,0.0003816922,0.7721606,0.00002670651,0.0001793681,0.0008750579,0.0004045228,0.03056394,0.1915116,0.001937277,0.001879976,0.00004059426],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9953138,0.0002675147,0.004073921,0.00000898568,0.000001980068,0.000003681086,0.0001175411,0.00004723194,0.0001654424],"genre_scores_gemma":[0.9951342,0.00008838868,0.004278623,0.00001967234,0.00000393119,0.000007605731,0.0003506906,0.00002309786,0.00009382144],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.0009310743,"threshold_uncertainty_score":0.002867281,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.04083914321909377,"score_gpt":0.267150895850723,"score_spread":0.2263117526316293,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}