{"id":"W3200761557","doi":"10.1094/phyto-08-21-0353-a","title":"Analysis of Draft Genome Resources of Thirty-Three Canadian Strains of <i>Pseudomonas syringae</i> pv. <i>tomato</i> Isolated Between 1992 and 2008 Reveals Achromobactin Virulence Cluster that Is Absent in the Reference Strain DC3000","year":2021,"lang":"en","type":"article","venue":"Phytopathology","topic":"Plant Pathogenic Bacteria Studies","field":"Agricultural and Biological Sciences","cited_by":2,"is_retracted":false,"has_abstract":false,"ca_institutions":"University of Manitoba; Canadian Food Inspection Agency; Agriculture and Agri-Food Canada","funders":"Agriculture and Agri-Food Canada","keywords":"Strain (injury); Virulence; Genome; Cluster (spacecraft); Whole genome sequencing","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0007319615,0.000209962,0.0008076699,0.00008806582,0.00009865894,0.00001636106,0.0004321591,0.0001746778,0.0000830068],"category_scores_gemma":[0.00007147192,0.00009886022,0.0001365462,0.0009476944,0.0003155986,0.00007568188,0.0001577546,0.0002086665,0.000001474918],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002354066,"about_ca_system_score_gemma":0.00003778007,"about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_topic_score_codex":0.009481388,"about_ca_topic_score_gemma":0.2241806,"domain_scores_codex":[0.9979138,0.0004335307,0.0005856331,0.0004421303,0.000227985,0.0003969134],"domain_scores_gemma":[0.9987553,0.0004666582,0.000391797,0.0002059663,0.00009293609,0.00008739502],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.00001969218,0.00004846937,0.3557692,0.00003081633,0.0001395571,0.00005788427,0.001642689,0.000006605956,0.6409934,0.00002771322,0.00002163877,0.001242334],"study_design_scores_gemma":[0.0001403381,0.0001392371,0.9942158,0.00004602227,0.0002458238,0.00005169556,0.0007859305,0.0000219032,0.003737467,0.0001345751,0.0003262619,0.0001549873],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9929801,0.0008040021,0.000003094465,0.001294752,0.00002259727,0.0001883369,0.004279295,0.000008587201,0.0004192891],"genre_scores_gemma":[0.9990208,0.0003425709,0.00007933672,0.0003271659,0.000029177,0.000009536439,0.0001723201,0.000001801618,0.00001733766],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.6384466,"threshold_uncertainty_score":0.9971145,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03209379696743565,"score_gpt":0.231459066154838,"score_spread":0.1993652691874023,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}