{"id":"W3200795010","doi":"10.17504/protocols.io.bxv4pn8w","title":"FindingNemo Library 2: Modified RAD004 v1","year":2021,"lang":"en","type":"preprint","venue":"","topic":"Advanced biosensing and bioanalysis techniques","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of British Columbia","funders":"Biotechnology and Biological Sciences Research Council","keywords":"Adapter (computing); Transposase; Computer science; Protocol (science); DNA sequencer; Nanopore sequencing; Computational biology; DNA; Biology; DNA sequencing; Operating system; Genetics; Medicine; Genome; Transposable element; Gene","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0008926828,0.001676612,0.001322144,0.001638662,0.0008117317,0.001583607,0.001864527,0.001161315,0.0369187],"category_scores_gemma":[0.001457556,0.001197546,0.0008959242,0.001119739,0.0004039459,0.0008318032,0.001806004,0.002072948,0.05466782],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0004182467,"about_ca_system_score_gemma":0.0006965054,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0004673463,"about_ca_topic_score_gemma":0.0008584506,"domain_scores_codex":[0.9987263,0.0001401984,0.0001098605,0.0004076262,0.0004393251,0.0001766546],"domain_scores_gemma":[0.9994994,0.0001051317,0.00003409942,0.0002079965,0.00009175821,0.00006154003],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0006733852,0.0002243011,0.0009826208,0.001014274,0.00008967506,0.0003577202,0.0002153595,0.0005552596,0.8796561,0.002462593,0.03266016,0.08110861],"study_design_scores_gemma":[0.00005630762,0.0001839128,0.001514508,0.00005014378,0.00005988613,0.0007153845,0.00004316926,0.001070864,0.7162622,0.0007442781,0.2792313,0.00006808618],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"methods","genre_gemma":"software","genre_scores_codex":[0.07891621,0.002372473,0.6612492,0.0006890855,0.0009169806,0.003981984,0.08757108,0.113284,0.05101906],"genre_scores_gemma":[0.08224364,0.001839498,0.4758998,0.001167475,0.0001754868,0.007872,0.2679983,0.03179642,0.1310073],"genre_candidate":"software","genre_consensus":null,"teacher_disagreement_score":0.0369187,"threshold_uncertainty_score":0.1235054,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01365079829178277,"score_gpt":0.2659639511395349,"score_spread":0.2523131528477521,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}