{"id":"W3200942549","doi":"10.1128/aem.01574-21","title":"Genomic and Phenotypic Analysis of Heat and Sanitizer Resistance in Escherichia coli from Beef in Relation to the Locus of Heat Resistance","year":2021,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Listeria monocytogenes in Food Safety","field":"Biochemistry, Genetics and Molecular Biology","cited_by":12,"is_retracted":false,"has_abstract":true,"ca_institutions":"Agriculture and Agri-Food Canada","funders":"Beef Cattle Research Council","keywords":"Escherichia coli; Locus (genetics); Genome; Prophage; Gene; Typing; Multilocus sequence typing; Phylogenetic tree; Plasmid","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001434512,0.0002253964,0.000159867,0.0006716672,0.0001756469,0.0002700589,0.0001865882,0.0002302271,0.00114358],"category_scores_gemma":[0.0005041646,0.0001540631,0.0003238981,0.0004793708,0.0002643341,0.0000876036,0.0002347449,0.0005323668,0.0003378169],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002252496,"about_ca_system_score_gemma":0.000211681,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.003561788,"about_ca_topic_score_gemma":0.002993969,"domain_scores_codex":[0.9997695,0.00004826166,0.00002108681,0.00004247682,0.00005698486,0.00006171218],"domain_scores_gemma":[0.9995876,0.0001358813,0.0001011505,0.0000349163,0.00006882858,0.00007152747],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0002058782,0.00009194641,0.003980872,0.00003819505,0.00001161724,0.00009697094,0.00009746147,0.00008250595,0.9934368,0.00006227626,0.00003240793,0.001863148],"study_design_scores_gemma":[0.00002517687,0.001087371,0.4767662,0.00002804582,0.00009287318,0.001773057,0.0007722132,0.0008118311,0.5166264,0.0001229105,0.001866671,0.00002719279],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9965571,0.0001587565,0.001316024,0.00008042765,0.00001019016,0.00001982762,0.001030882,0.0000155083,0.0008112454],"genre_scores_gemma":[0.9949546,0.0001146473,0.001119086,0.00006675013,0.000007718397,0.00001389368,0.002732533,0.00001889939,0.0009717962],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.003561788,"threshold_uncertainty_score":0.007082105,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.009722666182841684,"score_gpt":0.2110744712435776,"score_spread":0.2013518050607359,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}