{"id":"W3200949374","doi":"10.1371/journal.ppat.1009880","title":"Commensal bacteria augment Staphylococcus aureus infection by inactivation of phagocyte-derived reactive oxygen species","year":2021,"lang":"en","type":"article","venue":"PLoS Pathogens","topic":"Antimicrobial Resistance in Staphylococcus","field":"Medicine","cited_by":20,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Calgary","funders":"Institut National de Recherche pour l'Agriculture, l'Alimentation et l'Environnement; Institut National de la Recherche Agronomique; University of Sheffield; Wellcome Trust; Medical Research Council; Wellcome","keywords":"Staphylococcus aureus; Microbiology; Virulence; Reactive oxygen species; Biology; In vivo; Pathogen; Staphylococcal infections; Bacteria; Phagocyte; Phagocytosis; Leukocidin; Macrophage; Pathogenesis; In vitro; Immunology; Methicillin-resistant Staphylococcus aureus; Cell biology; Gene","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0001344473,0.0002886566,0.0005886589,0.0001337906,0.0001258363,0.0000280591,0.000081176,0.0001806635,0.0004271712],"category_scores_gemma":[0.0003523969,0.0002918273,0.0001921262,0.0004314051,0.0001555051,0.0001553044,0.00008925585,0.0002719602,0.00002521829],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0004621907,"about_ca_system_score_gemma":0.0002478366,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00005155405,"about_ca_topic_score_gemma":0.00002462158,"domain_scores_codex":[0.9980814,0.0001467675,0.0005150288,0.0004586636,0.0004336052,0.0003645454],"domain_scores_gemma":[0.9982171,0.0001310341,0.0003483678,0.0005078552,0.0006457549,0.0001499078],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0004711645,0.000893323,0.01418545,0.0001703579,0.0003122885,0.00006943492,0.0005225484,0.000002595274,0.9777365,0.00007675777,0.004859733,0.0006997891],"study_design_scores_gemma":[0.001248522,0.0002681701,0.1031082,0.0001960768,0.000212101,0.000006644062,0.0003999052,0.00002644708,0.8851396,0.00003605452,0.009130541,0.0002277052],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9940094,0.0001835487,0.001063778,0.0005063813,0.0002159853,0.0006178171,0.000443782,0.00009617781,0.002863176],"genre_scores_gemma":[0.9963003,0.0002367093,0.001556102,0.000303734,0.0001796361,0.00004744966,0.0005754101,0.00005566518,0.0007450103],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.09259691,"threshold_uncertainty_score":0.9999534,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.0239193246689876,"score_gpt":0.257757268039315,"score_spread":0.2338379433703274,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}