{"id":"W3201015463","doi":"10.1093/molbev/msab279","title":"Butyrate Production Pathway Abundances Are Similar in Human and Nonhuman Primate Gut Microbiomes","year":2021,"lang":"en","type":"article","venue":"Molecular Biology and Evolution","topic":"Gut microbiota and health","field":"Biochemistry, Genetics and Molecular Biology","cited_by":25,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"Feinberg School of Medicine; Canadian Institute for Advanced Research; Northwestern University","keywords":"Butyrate; Biology; Abundance (ecology); Microbiome; Relative species abundance; Primate; Human microbiome; Zoology; Evolutionary biology; Ecology; Genetics; Biochemistry","routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001921713,0.0001574561,0.0001799601,0.00007286068,0.000185862,0.00001863186,0.00005393756,0.0002473049,0.000004685949],"category_scores_gemma":[0.00003587838,0.0001591363,0.00003494745,0.00009533864,0.0001891728,0.000006542792,0.00009910425,0.0001125191,0.000002069101],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002549406,"about_ca_system_score_gemma":0.00006371972,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00003654991,"about_ca_topic_score_gemma":0.0004073303,"domain_scores_codex":[0.9988168,0.0001540407,0.0001994718,0.0005298586,0.00002886004,0.0002709476],"domain_scores_gemma":[0.9995884,0.000002923689,0.0000876489,0.0001978235,0.00007127463,0.00005193906],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00002399118,0.00004930556,0.03336059,0.00006083743,0.00001935292,0.00001129207,0.0000413251,0.000006114481,0.9651705,0.0008834627,0.00009254591,0.0002807041],"study_design_scores_gemma":[0.0006631265,0.0002182616,0.1614601,0.00005736094,0.00001680093,0.0001380348,0.0001404787,0.00001011474,0.8302611,0.001856111,0.004882455,0.0002960294],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9899116,0.00830895,0.0006359018,0.000726454,0.0001378826,0.0001503375,0.00002570714,0.00001249293,0.00009067112],"genre_scores_gemma":[0.9980279,0.0006434243,0.0004267871,0.0002573991,0.00007815249,0.00001296581,0.000292871,0.00001279181,0.0002476696],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.1349094,"threshold_uncertainty_score":0.6489391,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.006303208114308644,"score_gpt":0.2748136837570786,"score_spread":0.26851047564277,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}