{"id":"W3201933388","doi":"10.26685/urncst.288","title":"Computational Design and Lab-Based Investigation of a Novel Small-Molecule Inhibitor That Targets CadA Metal Efflux Pump Activity in Hospital Methicillin-Resistant Staphylococcus Aureus: A Research Protocol","year":2021,"lang":"en","type":"article","venue":"Undergraduate Research in Natural and Clinical Science and Technology (URNCST) Journal","topic":"Bacterial biofilms and quorum sensing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"Western University","funders":"","keywords":"Staphylococcus aureus; Efflux; Methicillin-resistant Staphylococcus aureus; Minimum inhibitory concentration; Cadmium; Antibiotic resistance; Microbiology; Small molecule; Antibiotics; Chemistry; Bacteria; Biology; Biochemistry; Genetics","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004884739,0.001211692,0.001254049,0.0003367912,0.0005299531,0.0008008445,0.001408438,0.001115027,0.01081967],"category_scores_gemma":[0.0007420173,0.000427466,0.001270865,0.0004044447,0.0003293005,0.0005126193,0.0006707103,0.001016094,0.0009266435],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0007213163,"about_ca_system_score_gemma":0.002733749,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00441477,"about_ca_topic_score_gemma":0.006458934,"domain_scores_codex":[0.9998367,0.00003441245,0.000006492755,0.00003449587,0.00004386689,0.0000440427],"domain_scores_gemma":[0.9997409,0.0001227808,0.00001966135,0.00001880569,0.00007461102,0.00002319828],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"simulation_or_modeling","study_design_gemma":"simulation_or_modeling","study_design_scores_codex":[0.0008586065,0.0006546833,0.003852143,0.002652322,0.000321493,0.001541245,0.00009445335,0.9043092,0.02591455,0.02116794,0.01138427,0.02724919],"study_design_scores_gemma":[0.0006922463,0.001259794,0.000913326,0.00009037651,0.0002062394,0.0001569958,0.0001221934,0.9666608,0.007807042,0.005537624,0.01650107,0.00005222716],"study_design_candidate":"simulation_or_modeling","study_design_consensus":"simulation_or_modeling","genre_codex":"empirical","genre_gemma":"protocol","genre_scores_codex":[0.7182732,0.009704426,0.1416311,0.00542393,0.0006299094,0.002508597,0.01843134,0.002201563,0.101196],"genre_scores_gemma":[0.7534174,0.00732279,0.1918274,0.001514604,0.0001008701,0.006598149,0.01693746,0.0003425783,0.02193876],"genre_candidate":"protocol","genre_consensus":null,"teacher_disagreement_score":0.01081967,"threshold_uncertainty_score":0.0361954,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.08068388313074984,"score_gpt":0.3886163150615086,"score_spread":0.3079324319307588,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}