{"id":"W3202305688","doi":"10.15252/msb.202110574","title":"An engineered Mycoplasma pneumoniae to fight Staphylococcus aureus","year":2021,"lang":"en","type":"letter","venue":"Molecular Systems Biology","topic":"Microbial infections and disease research","field":"Immunology and Microbiology","cited_by":4,"is_retracted":false,"has_abstract":true,"ca_institutions":"Université de Sherbrooke","funders":"","keywords":"Biology; Microbiology; Staphylococcus aureus; Biofilm; Mycoplasma pneumoniae; Pathogen; Virulence; Antimicrobial; Genetically engineered; Mycoplasma; Drug resistance; Bacteria; Pneumonia; Gene; Medicine","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow","research_integrity","insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.0003064456,0.0006787434,0.001097776,0.0006895525,0.000236564,0.0001312798,0.0007493072,0.003080161,0.001036856],"category_scores_gemma":[0.0001212294,0.0006346262,0.0003760668,0.0004558765,0.0001564908,0.00004391356,0.0002524681,0.001981172,0.002388469],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001820271,"about_ca_system_score_gemma":0.000383294,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0007784544,"about_ca_topic_score_gemma":0.00003490052,"domain_scores_codex":[0.9947982,0.00186475,0.0006681376,0.001296749,0.00007916294,0.001292951],"domain_scores_gemma":[0.997604,0.0001328545,0.0001700849,0.001557516,0.0003976494,0.0001378536],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0000132875,0.00006093733,0.00003427192,0.0001240768,0.0004062041,0.0008615094,0.00002845377,0.00005937722,0.5667548,0.0001357404,0.4313825,0.0001388237],"study_design_scores_gemma":[0.0004866944,0.0004303255,0.000006683801,0.0001132026,0.00009028351,0.0005025608,0.00002765206,0.00001059694,0.03887532,0.00001449488,0.9587446,0.0006975121],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.4403049,0.1244012,0.02765348,0.3310068,0.0418748,0.01109186,0.01514421,0.002242958,0.006279815],"genre_scores_gemma":[0.6211827,0.0002341523,0.000106086,0.3160113,0.003825089,0.001713698,0.03851271,0.0004936588,0.0179206],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.5278795,"threshold_uncertainty_score":0.9998763,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01240278114205979,"score_gpt":0.2634124519194242,"score_spread":0.2510096707773644,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}