{"id":"W3202440228","doi":"10.1371/journal.pntd.0009828","title":"Mining nematode protein secretomes to explain lifestyle and host specificity","year":2021,"lang":"en","type":"article","venue":"PLoS neglected tropical diseases","topic":"Studies on Chitinases and Chitosanases","field":"Biochemistry, Genetics and Molecular Biology","cited_by":27,"is_retracted":false,"has_abstract":true,"ca_institutions":"McGill University","funders":"Natural Sciences and Engineering Research Council of Canada; Canadian Network for Research and Innovation in Machining Technology, Natural Sciences and Engineering Research Council of Canada; Schweizerischer Nationalfonds zur Förderung der Wissenschaftlichen Forschung","keywords":"Biology; Nematode; Host (biology); Caenorhabditis elegans; Computational biology; Gene; Evolutionary biology; Genetics; Ecology","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0006218131,0.0006434056,0.0005752381,0.005106239,0.0004219828,0.001213383,0.0003057428,0.0005053448,0.001181813],"category_scores_gemma":[0.001529979,0.0001973769,0.0007771442,0.003027834,0.0002290337,0.001016012,0.0008521975,0.0004306922,0.0009444795],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003572517,"about_ca_system_score_gemma":0.0003945674,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001445463,"about_ca_topic_score_gemma":0.002767644,"domain_scores_codex":[0.9996859,0.0000353758,0.00003169282,0.0001297473,0.00005648472,0.00006086539],"domain_scores_gemma":[0.9994215,0.0001650919,0.0001732838,0.00006147211,0.0001144652,0.0000642761],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.001372793,0.0001968735,0.4642775,0.00260096,0.0007747379,0.001801082,0.0008219129,0.003238395,0.4275358,0.001502795,0.00577634,0.09010086],"study_design_scores_gemma":[0.00004359819,0.000246564,0.8624257,0.0003146474,0.0006351388,0.002676824,0.001289579,0.03927912,0.05104481,0.006067795,0.03588476,0.00009150962],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9437306,0.009624925,0.01576586,0.0003092709,0.00006925648,0.0001039142,0.02587988,0.0005959107,0.003920296],"genre_scores_gemma":[0.9227021,0.004058056,0.03148085,0.0001534927,0.00005811943,0.0001172414,0.03940587,0.0001672835,0.001857006],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.005106239,"threshold_uncertainty_score":0.003953576,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.009856661931243621,"score_gpt":0.2321672436087978,"score_spread":0.2223105816775542,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}