{"id":"W3202924187","doi":"10.1093/neuonc/noab235","title":"DNA methylation-based prognostic subtypes of chordoma tumors in tissue and plasma","year":2021,"lang":"en","type":"article","venue":"Neuro-Oncology","topic":"Bone Tumor Diagnosis and Treatments","field":"Medicine","cited_by":62,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Manitoba; Princess Margaret Cancer Centre; University of Toronto; University Health Network","funders":"Canadian Institutes of Health Research; Beijing Municipal Science and Technology Commission; Canada Research Chairs; Terry Fox Research Institute; Canadian Cancer Society; National Institutes of Health; Ontario Institute for Cancer Research; Natural Sciences and Engineering Research Council of Canada; Princess Margaret Cancer Foundation","keywords":"DNA methylation; Chordoma; Methylation; Cancer research; DNA; Biology; Pathology; Medicine; Genetics; Gene; Gene expression","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0008667971,0.0002340934,0.000266344,0.0006241653,0.0001640432,0.0004519094,0.0002467981,0.000234888,0.0009119827],"category_scores_gemma":[0.002754577,0.00009731666,0.0002891642,0.0003811885,0.0002092038,0.0002059944,0.0004750166,0.0003365566,0.0002187072],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003071542,"about_ca_system_score_gemma":0.0002057565,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001647358,"about_ca_topic_score_gemma":0.00233592,"domain_scores_codex":[0.9996194,0.00007332044,0.00003032833,0.0001436528,0.00008045658,0.0000528647],"domain_scores_gemma":[0.9987866,0.0004037564,0.0004255756,0.0001097746,0.0001726074,0.0001016599],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0006375082,0.00001106912,0.9759971,0.00002771592,0.0001270027,0.0000619384,0.000107424,0.0007556596,0.01040501,0.00004614224,0.0001369931,0.0116865],"study_design_scores_gemma":[0.00001328066,0.0001314917,0.9883448,0.00001007322,0.00009861866,0.0005497418,0.0001712602,0.005200492,0.004742703,0.0003810479,0.0003473609,0.000009035747],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9967405,0.0003297703,0.002084959,0.00003598107,0.000004340503,0.00001128639,0.0004227576,0.00003469726,0.0003356932],"genre_scores_gemma":[0.9990652,0.00003568199,0.000506037,0.000006516592,0.000003033617,0.000004692553,0.0003030159,0.000005288809,0.00007060885],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001647358,"threshold_uncertainty_score":0.004584134,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01921135623655127,"score_gpt":0.3015004792846447,"score_spread":0.2822891230480934,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}