{"id":"W3202952852","doi":"10.1128/spectrum.00067-21","title":"Early Neonatal Meconium Does Not Have a Demonstrable Microbiota Determined through Use of Robust Negative Controls with <i>cpn</i> 60-Based Microbiome Profiling","year":2021,"lang":"en","type":"article","venue":"Microbiology Spectrum","topic":"Gut microbiota and health","field":"Biochemistry, Genetics and Molecular Biology","cited_by":22,"is_retracted":false,"has_abstract":true,"ca_institutions":"Centre Hospitalier Universitaire Sainte-Justine; Agriculture and Agri-Food Canada; Women's Health Research Institute; University of British Columbia; University of Saskatchewan","funders":"Canadian Institutes of Health Research; Government of Canada","keywords":"Meconium; Microbiome; Biology; Microbiology; Colonization; Pulsed-field gel electrophoresis; In utero; Physiology; Immunology; Fetus; Genetics; Pregnancy; Gene","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0002110091,0.0006236798,0.0008811794,0.000120132,0.0002430534,0.00008452511,0.0003983401,0.0006349059,0.0001487106],"category_scores_gemma":[0.00006951316,0.0004994054,0.0003086606,0.0002406883,0.0007954219,0.00003172945,0.000215005,0.0004258952,0.00002030267],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00008462718,"about_ca_system_score_gemma":0.0008336102,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0004144321,"about_ca_topic_score_gemma":0.00285034,"domain_scores_codex":[0.9964991,0.0003118264,0.0007866471,0.001245738,0.00007029605,0.00108642],"domain_scores_gemma":[0.9980711,0.0001185714,0.0004838836,0.0008688138,0.0003132377,0.0001443575],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.001151031,0.0002130493,0.006093925,0.0001176418,0.0003147023,0.0001160065,0.0001135153,0.0001476527,0.9911311,0.00006066853,0.0005069078,0.00003380661],"study_design_scores_gemma":[0.003774669,0.0008553122,0.001403237,0.0001146515,0.0001173946,0.0006095489,0.0001311788,0.00002725226,0.9846814,0.00002516125,0.007619666,0.0006405382],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9911755,0.0005469052,0.003228077,0.001255596,0.0003100499,0.0008317578,0.002518609,0.00004218308,0.00009128822],"genre_scores_gemma":[0.9632801,0.00009032284,0.03091379,0.002291853,0.0001555555,0.0000375851,0.001830618,0.0000967888,0.001303355],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.0278954,"threshold_uncertainty_score":0.9997458,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01345012244791964,"score_gpt":0.2260200042700044,"score_spread":0.2125698818220847,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}