{"id":"W3202981271","doi":"10.1101/2021.09.29.462206","title":"Genome graphs detect human polymorphisms in active epigenomic state during influenza infection","year":2021,"lang":"en","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"interferon and immune responses","field":"Immunology and Microbiology","cited_by":6,"is_retracted":false,"has_abstract":true,"ca_institutions":"McGill Genome Centre; Ontario Genomics; McGill University","funders":"Canadian Institutes of Health Research; Compute Canada; Genome Canada; McGill University","keywords":"Epigenomics; Biology; Epigenome; Genome; Epigenetics; Genetics; Computational biology; Chromatin; Gene; Evolutionary biology; DNA methylation; Gene expression","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001848928,0.0001642099,0.000165704,0.0008624541,0.000160613,0.0003407193,0.0001703373,0.0002570363,0.001794602],"category_scores_gemma":[0.001314234,0.0001227434,0.0002173862,0.0008540424,0.0001401761,0.0002356322,0.0002453658,0.0001863492,0.0002379241],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001864889,"about_ca_system_score_gemma":0.0001050983,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00146798,"about_ca_topic_score_gemma":0.002073924,"domain_scores_codex":[0.9998544,0.00003311583,0.000007102382,0.00006188906,0.00002489781,0.00001840902],"domain_scores_gemma":[0.9991841,0.0004406502,0.0001671323,0.00008508462,0.0000721891,0.00005087184],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.002212685,0.0001580739,0.5115814,0.0005518059,0.0006935541,0.0005229529,0.0006473812,0.02812647,0.3423516,0.005274525,0.007916437,0.09996322],"study_design_scores_gemma":[0.00004763216,0.0002442003,0.8571437,0.00003778457,0.0001744901,0.0007548404,0.0004559909,0.08742287,0.03496595,0.01020916,0.008485588,0.00005781736],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9756576,0.0002803409,0.01482783,0.0001031698,0.00001859548,0.0000147848,0.007844165,0.0004352187,0.0008182498],"genre_scores_gemma":[0.9799818,0.0001061735,0.01065713,0.00004107047,0.0000131654,0.00001915792,0.008724178,0.0000856793,0.0003716327],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001794602,"threshold_uncertainty_score":0.006003559,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01255597445468504,"score_gpt":0.2291401547072234,"score_spread":0.2165841802525384,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}