{"id":"W3203297586","doi":"10.1101/2021.09.28.21264268","title":"Effects of Diet on the Microbiome and Serum Metabolome of South Asian Infants at 1 Year","year":2021,"lang":"en","type":"preprint","venue":"medRxiv","topic":"Gut microbiota and health","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"McMaster University; Impact","funders":"Canadian Institutes of Health Research; McMaster University; Indian Council of Medical Research; Genome Canada; Heart and Stroke Foundation of Canada","keywords":"Metabolome; Breastfeeding; Cohort; Biology; Microbiome; Gut flora; Breast feeding; Metabolite; Physiology; Internal medicine; Endocrinology; Medicine; Biochemistry; Bioinformatics; Pediatrics","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003727185,0.0002652174,0.0002755653,0.0003058477,0.0002614372,0.0004042099,0.000146647,0.0002633689,0.001026223],"category_scores_gemma":[0.0008957983,0.0001678935,0.0003819823,0.000435422,0.0001268491,0.0002050049,0.0004362624,0.0003471513,0.0001741945],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002543947,"about_ca_system_score_gemma":0.0002701088,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.009441921,"about_ca_topic_score_gemma":0.009773113,"domain_scores_codex":[0.9998591,0.0000311787,0.0000124617,0.00003840793,0.00002680475,0.00003194668],"domain_scores_gemma":[0.9995908,0.00005223023,0.0001504659,0.00003842894,0.00007108928,0.00009686923],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0004244309,0.00003136129,0.9939519,0.00001830597,0.00005481103,0.0001029026,0.0002361726,0.000030376,0.003206027,0.00001138184,0.00006129582,0.001871188],"study_design_scores_gemma":[0.000001110965,0.00008200194,0.9993824,0.0000027475,0.00001665592,0.00005742265,0.0001514463,0.00005055714,0.0001935238,0.000004196996,0.00005647269,0.000001392765],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9994227,0.00008872431,0.00002732967,0.00001091048,0.000001552733,0.000002069013,0.0003167205,0.000001697724,0.0001282906],"genre_scores_gemma":[0.9991696,0.00008691155,0.00009025409,0.00001415183,0.000001958707,0.000008395843,0.0003568277,0.000001891782,0.0002699791],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.009441921,"threshold_uncertainty_score":0.01877391,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.007670328654972483,"score_gpt":0.2325358197430349,"score_spread":0.2248654910880624,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}