{"id":"W3204065639","doi":"10.3389/fcimb.2021.709372","title":"Microbiome Compositions From Infertile Couples Seeking In Vitro Fertilization, Using 16S rRNA Gene Sequencing Methods: Any Correlation to Clinical Outcomes?","year":2021,"lang":"en","type":"article","venue":"Frontiers in Cellular and Infection Microbiology","topic":"Reproductive tract infections research","field":"Immunology and Microbiology","cited_by":54,"is_retracted":false,"has_abstract":true,"ca_institutions":"Ontario Genomics","funders":"","keywords":"Biology; Gardnerella vaginalis; Lactobacillus gasseri; Lactobacillus; Prevotella; Ruminococcus; Microbiology; Lactobacillus crispatus; Bacteroidetes; Firmicutes; Haemophilus; Microbiome; Peptostreptococcus; Bacteroides thetaiotaomicron; Ureaplasma; Bacteroides; Bacterial vaginosis; 16S ribosomal RNA; Genetics; Mycoplasma; Bacteria; Feces","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.001238164,0.0003013214,0.0007439862,0.0008792314,0.000306406,0.00005178921,0.0001261741,0.0006376011,0.0001396353],"category_scores_gemma":[0.0006448515,0.000326348,0.000158659,0.0009658684,0.0003242931,0.0002440877,0.0001945787,0.0008177928,0.00005285793],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0005892037,"about_ca_system_score_gemma":0.0002448501,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00112896,"about_ca_topic_score_gemma":0.0002384398,"domain_scores_codex":[0.9954734,0.002014334,0.001007119,0.000931968,0.00003017989,0.0005430394],"domain_scores_gemma":[0.9986253,0.000417405,0.0002016439,0.0004240321,0.0002717368,0.00005991965],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00009620622,0.000182938,0.359156,0.000009799269,0.0001393483,0.00000747898,0.0002096998,0.001003139,0.6379352,0.000008311403,0.0001266269,0.001125274],"study_design_scores_gemma":[0.002095822,0.0001442366,0.1406055,0.00006680187,0.0000725717,0.0002036036,0.0002792332,0.001408554,0.8484921,0.0002864779,0.005902876,0.0004422163],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.6854632,0.00225885,0.3087453,0.00009172352,0.002910071,0.0003646372,0.0000902224,0.00004603502,0.00002991968],"genre_scores_gemma":[0.9606175,0.000323811,0.03706228,0.0002406533,0.00007335352,0.00003683237,0.0014736,0.00003711631,0.0001348556],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.2751543,"threshold_uncertainty_score":0.9999189,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.04618078272662948,"score_gpt":0.3553763551341887,"score_spread":0.3091955724075592,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}