{"id":"W3204213449","doi":"10.1101/2021.09.28.462094","title":"16S rRNA gene sequences of <i>Candidatus</i> Methylumidiphilus ( <i>Methylococcales</i> ), a putative methanotrophic genus in lakes and ponds","year":2021,"lang":"en","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"Microbial Community Ecology and Physiology","field":"Environmental Science","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"Uppsala Multidisciplinary Center for Advanced Computational Science; Science for Life Laboratory; Koneen Säätiö","keywords":"GenBank; 16S ribosomal RNA; Candidatus; Biology; Ribosomal RNA; Metagenomics; Genus; Gene; Ecology; Genetics","routes":{"ca_aff":false,"ca_fund":false,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002267124,0.0004046911,0.0004025579,0.001183707,0.0003729129,0.0005108753,0.0001798743,0.000319185,0.0005057204],"category_scores_gemma":[0.0005653587,0.0001408495,0.0004433566,0.001706179,0.000177417,0.0002425902,0.0005805322,0.000213061,0.000304737],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002167756,"about_ca_system_score_gemma":0.000402173,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.003328634,"about_ca_topic_score_gemma":0.004733012,"domain_scores_codex":[0.9996618,0.00002038093,0.00004787189,0.0001190533,0.00008209429,0.0000687248],"domain_scores_gemma":[0.9996492,0.00004092145,0.00014062,0.00003178486,0.00007561018,0.00006198396],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0007849521,0.000046859,0.1282829,0.0004443482,0.00009718676,0.0003085182,0.0004579699,0.0003659701,0.8527954,0.00005284638,0.0002751644,0.01608794],"study_design_scores_gemma":[0.00001410348,0.0002239727,0.9437083,0.00006043004,0.0001454958,0.0005054744,0.0004972608,0.0009901637,0.04830756,0.00004251209,0.005479771,0.00002486229],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9906911,0.0005321784,0.0004102855,0.00001392648,0.0000068969,0.00002403387,0.00794318,0.00003336865,0.0003452621],"genre_scores_gemma":[0.9619577,0.000464949,0.004630332,0.00004754203,0.0000116954,0.00005855482,0.03227113,0.0000206714,0.0005373202],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.003328634,"threshold_uncertainty_score":0.0066185,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01059107174925571,"score_gpt":0.2166024443754207,"score_spread":0.206011372626165,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}