{"id":"W3204258664","doi":"10.1186/s12915-021-01158-2","title":"The transposable element-rich genome of the cereal pest Sitophilus oryzae","year":2021,"lang":"en","type":"preprint","venue":"BMC Biology","topic":"Insect symbiosis and bacterial influences","field":"Agricultural and Biological Sciences","cited_by":1,"is_retracted":false,"has_abstract":true,"ca_institutions":"McGill University","funders":"European Regional Development Fund; Institut National de Recherche pour l'Agriculture, l'Alimentation et l'Environnement; Université de Paris; Sorbonne Université; Université de Lyon; Région Auvergne-Rhône-Alpes; Université Paris-Est Créteil Val-de-Marne; Institute for Research in Biomedicine; Ministerio de Economía y Competitividad; Institut National des Sciences Appliquées de Lyon; Centre National de la Recherche Scientifique; Fundación para el Fomento de la Investigación Sanitaria y Biomédica de la Comunitat Valenciana; Institució Catalana de Recerca i Estudis Avançats; Centre de Coopération Internationale en Recherche Agronomique pour le Développement; École Polytechnique Fédérale de Lausanne; University of Melbourne; National Human Genome Research Institute; Agence Nationale de la Recherche; Ministerio de Ciencia, Innovación y Universidades","keywords":"Sitophilus; Biology; Endosymbiosis; Rice weevil; Curculionidae; Genome; Transposable element; PEST analysis; Xanthomonas oryzae; Host (biology); Insect; Botany; Gene; Genetics; Plastid; Chloroplast","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001057068,0.0004260298,0.0002439512,0.0004907271,0.0001993804,0.0001972542,0.0001502096,0.0002650316,0.001122673],"category_scores_gemma":[0.0002427255,0.0001388062,0.0003426271,0.0006962187,0.000104243,0.0001820742,0.0002143712,0.0003747735,0.0004958225],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002070428,"about_ca_system_score_gemma":0.0003134443,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001436465,"about_ca_topic_score_gemma":0.001829876,"domain_scores_codex":[0.999926,0.000005803012,0.000005704862,0.00003378747,0.00001672053,0.00001200691],"domain_scores_gemma":[0.9998654,0.00003023834,0.00003877969,0.00001467753,0.00002614189,0.00002477334],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0002940227,0.00002082337,0.005188493,0.000220154,0.00003991825,0.0001492125,0.0001026056,0.0002376241,0.9872913,0.00006065285,0.0002028804,0.006192422],"study_design_scores_gemma":[0.0001270739,0.001057982,0.6502824,0.0001602425,0.0006552609,0.003851917,0.000688698,0.005233062,0.2996957,0.0006412617,0.03754193,0.00006445065],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9665259,0.001340022,0.00568134,0.0001055228,0.0000302094,0.00005581975,0.02499514,0.0003585384,0.0009075747],"genre_scores_gemma":[0.8871396,0.001036146,0.02528059,0.0001322159,0.00003289178,0.000109887,0.08394527,0.0002154656,0.002108058],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001436465,"threshold_uncertainty_score":0.003755748,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02538972965389309,"score_gpt":0.2280764119733727,"score_spread":0.2026866823194796,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}