{"id":"W3204389003","doi":"10.1021/acs.analchem.1c02621","title":"Nontargeted Analysis Study Reporting Tool: A Framework to Improve Research Transparency and Reproducibility","year":2021,"lang":"en","type":"article","venue":"Analytical Chemistry","topic":"Metabolomics and Mass Spectrometry Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":135,"is_retracted":false,"has_abstract":true,"ca_institutions":"Agriculture and Agri-Food Canada","funders":"National Science Foundation","keywords":"Chemistry; Transparency (behavior); Reproducibility; Chromatography; Computer security; Computer science","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":["metaresearch"],"consensus_categories":["metaresearch"],"category_scores_codex":[0.8137032,0.004254733,0.00513877,0.04163451,0.007433599,0.0233955,0.009421187,0.006574971,0.007110685],"category_scores_gemma":[0.8289976,0.004314948,0.008668439,0.02183312,0.009923195,0.01796306,0.02397012,0.01056825,0.00538957],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.01115447,"about_ca_system_score_gemma":0.09076712,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.003875354,"about_ca_topic_score_gemma":0.005149136,"domain_scores_codex":[0.155009,0.5769123,0.1912261,0.01227908,0.06141144,0.003162156],"domain_scores_gemma":[0.04449385,0.5536012,0.0922078,0.1074853,0.1966277,0.005584168],"domain_codex":"methods","domain_gemma":"reproducibility","domain_candidate":"reproducibility","domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.001537186,0.000842178,0.02578962,0.02639336,0.00220001,0.0009093299,0.04197762,0.004844487,0.007743447,0.09030917,0.09338158,0.704072],"study_design_scores_gemma":[0.001635485,0.002087817,0.03276805,0.03683449,0.001941186,0.001173721,0.01129394,0.02813391,0.02233155,0.1760356,0.6838114,0.001952896],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"methods","genre_gemma":"methods","genre_scores_codex":[0.005985703,0.002088626,0.9205714,0.01517399,0.002194314,0.03445745,0.00422512,0.006810932,0.008492406],"genre_scores_gemma":[0.0196541,0.0007973472,0.9236675,0.00191028,0.0006546213,0.04921404,0.002020181,0.000899931,0.001181925],"genre_candidate":"methods","genre_consensus":"methods","teacher_disagreement_score":0.1862968,"threshold_uncertainty_score":0.2297372,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.05556872455809321,"score_gpt":0.3860447384977591,"score_spread":0.3304760139396659,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}