{"id":"W3204419502","doi":"10.1093/emph/eoab028","title":"Concordance of HIV transmission risk factors elucidated using viral diversification rate and phylogenetic clustering","year":2021,"lang":"en","type":"article","venue":"Evolution Medicine and Public Health","topic":"HIV Research and Treatment","field":"Immunology and Microbiology","cited_by":7,"is_retracted":false,"has_abstract":true,"ca_institutions":"Simon Fraser University; Vancouver General Hospital; St. Paul's Hospital; University of British Columbia; BC Cancer Agency","funders":"Canadian Institutes of Health Research; Michael Smith Health Research BC; Ministry of Health, British Columbia; Public Health Agency of Canada","keywords":"Concordance; Phylogenetic tree; Diversification (marketing strategy); Cluster analysis; Transmission (telecommunications); Human immunodeficiency virus (HIV); Biology; Virology; Medicine; Genetics; Statistics; Mathematics; Computer science; Gene; Business","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004299603,0.00008633723,0.0002143979,0.0000962117,0.0002563435,0.000004704538,0.00003397476,0.00006578651,0.0001353555],"category_scores_gemma":[0.0001233488,0.00006596978,0.00001651319,0.0001492654,0.0002109155,0.00006375425,0.00002622109,0.0001307606,0.00000428551],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00006779535,"about_ca_system_score_gemma":0.0002708238,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001660756,"about_ca_topic_score_gemma":0.00004735249,"domain_scores_codex":[0.9987661,0.0005178427,0.000227957,0.0001997486,0.00004239934,0.0002459518],"domain_scores_gemma":[0.999491,0.00009501114,0.0001188133,0.000105024,0.00008838079,0.0001018231],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0001832475,0.000262575,0.5078459,0.0003851473,0.0002933126,0.000008035448,0.007435085,0.00003191477,0.3945601,0.0003769845,0.001859784,0.08675788],"study_design_scores_gemma":[0.006018241,0.001019714,0.9575795,0.000232955,0.00006183537,0.00006850011,0.005941773,0.002023783,0.004471733,0.0001151336,0.02228063,0.0001861849],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9562986,0.01539841,0.02554479,0.002412839,0.00008117422,0.0001431962,0.00006458299,0.00001416916,0.00004222846],"genre_scores_gemma":[0.9957854,0.003512081,0.0001858751,0.0000613099,0.00001603683,0.000001948732,0.0003216699,0.000004289971,0.000111371],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.4497336,"threshold_uncertainty_score":0.269017,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.04941987278945168,"score_gpt":0.3121682679551098,"score_spread":0.2627483951656581,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}