{"id":"W3204551635","doi":"10.1038/s41467-021-26055-8","title":"Emergence and spread of SARS-CoV-2 lineage B.1.620 with variant of concern-like mutations and deletions","year":2021,"lang":"en","type":"article","venue":"Nature Communications","topic":"SARS-CoV-2 and COVID-19 Research","field":"Medicine","cited_by":75,"is_retracted":false,"has_abstract":true,"ca_institutions":"BlueDot (Canada); University of Toronto; St. Michael's Hospital","funders":"KU Leuven; Nederlandse Organisatie voor Wetenschappelijk Onderzoek; Vlaamse regering; European Commission; Institut de Recherche pour le Développement; World Health Organization","keywords":"Lineage (genetic); Biology; Evolutionary biology; Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2); Pandemic; Genome; Genetics; Mutation; Genomics; Transmission (telecommunications); Coronavirus disease 2019 (COVID-19); Spike Protein; Virology; Gene; Medicine; Disease; Infectious disease (medical specialty)","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001708483,0.0001632715,0.0001091056,0.0005269714,0.0004294757,0.0005313744,0.0001307184,0.0003212187,0.0006282619],"category_scores_gemma":[0.0002482069,0.0001074639,0.0001476846,0.0005444859,0.0001939949,0.0001424813,0.0003769128,0.0002532092,0.0001947793],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002909259,"about_ca_system_score_gemma":0.0002502209,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00419377,"about_ca_topic_score_gemma":0.004576442,"domain_scores_codex":[0.9999,0.00001390686,0.000007459717,0.00002924686,0.00001827358,0.00003115673],"domain_scores_gemma":[0.999873,0.00001293228,0.00005330301,0.00001207502,0.00002047368,0.0000281869],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.000535952,0.00005575813,0.7772394,0.00007548377,0.00003675762,0.008083518,0.002396081,0.0008171833,0.1756973,0.001055776,0.0004741098,0.03353268],"study_design_scores_gemma":[0.00001795063,0.0002872569,0.9547806,0.00006201616,0.00002859595,0.01536868,0.001638596,0.0008877336,0.01739951,0.0003664245,0.0091373,0.00002538741],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9987336,0.0001509822,0.0001500857,0.00003551597,0.000002384442,0.000005374304,0.0001114855,0.000005201017,0.000805398],"genre_scores_gemma":[0.9984334,0.000165227,0.0005646727,0.00005287994,0.000003172366,0.000002905128,0.0003312648,0.000002731157,0.0004437248],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.00419377,"threshold_uncertainty_score":0.008338749,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.06719721874272365,"score_gpt":0.3942636343367146,"score_spread":0.327066415593991,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}