{"id":"W3204805824","doi":"10.3389/fcimb.2021.729476","title":"Molecular Epidemiology of Azole-Resistant Aspergillus fumigatus in France Shows Patient and Healthcare Links to Environmentally Occurring Genotypes","year":2021,"lang":"en","type":"article","venue":"Frontiers in Cellular and Infection Microbiology","topic":"Antifungal resistance and susceptibility","field":"Medicine","cited_by":21,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"Institut écologie et environnement; Natural Environment Research Council; Institut National de Recherche pour l'Agriculture, l'Alimentation et l'Environnement; Medical Research Council; Canadian Institute for Advanced Research; Centre National de la Recherche Scientifique; Sight Research UK; Wellcome Trust","keywords":"Aspergillus fumigatus; Genotype; Genotyping; Biology; Azole; Microbiology; Aspergillus; Molecular epidemiology; Antifungal; Genetics; Gene","routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003044299,0.0001490753,0.0005620055,0.000149726,0.00003902395,0.000002036003,0.00002863538,0.0003227618,0.00002067291],"category_scores_gemma":[0.000147958,0.0001468668,0.00006148995,0.0001500498,0.0001829287,0.00002893309,0.00007109544,0.0003632255,0.000001331331],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001129694,"about_ca_system_score_gemma":0.00005851901,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000282555,"about_ca_topic_score_gemma":0.0002937059,"domain_scores_codex":[0.9984679,0.0002728021,0.0004873667,0.0004469921,0.00003594582,0.0002889519],"domain_scores_gemma":[0.9995365,0.00004803114,0.00008551629,0.0001937192,0.00003593332,0.0001003625],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.000127558,0.00007296666,0.6527582,0.0001343782,0.00001826118,0.0000415074,0.0002043286,0.00004972454,0.343912,0.00004746348,0.00003402067,0.002599635],"study_design_scores_gemma":[0.001580613,0.0008833316,0.8564911,0.0002504167,0.00003622722,0.00006160702,0.0005155693,0.0001677737,0.1318011,0.0002984824,0.00764019,0.0002735442],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9730918,0.02218134,0.00374509,0.000317056,0.000291226,0.0002836731,0.00002744669,0.000007384563,0.00005502292],"genre_scores_gemma":[0.9952074,0.001082981,0.002355077,0.001238764,0.00001556518,0.00001077119,0.00004721685,0.00001026752,0.00003200906],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.2121109,"threshold_uncertainty_score":0.5989056,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.009371238554463668,"score_gpt":0.2448461129194017,"score_spread":0.235474874364938,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}