{"id":"W3204805824","doi":"10.3389/fcimb.2021.729476","title":"Molecular Epidemiology of Azole-Resistant Aspergillus fumigatus in France Shows Patient and Healthcare Links to Environmentally Occurring Genotypes","year":2021,"lang":"en","type":"article","venue":"Frontiers in Cellular and Infection Microbiology","topic":"Antifungal resistance and susceptibility","field":"Medicine","cited_by":21,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"Institut écologie et environnement; Natural Environment Research Council; Institut National de Recherche pour l'Agriculture, l'Alimentation et l'Environnement; Medical Research Council; Canadian Institute for Advanced Research; Centre National de la Recherche Scientifique; Sight Research UK; Wellcome Trust","keywords":"Aspergillus fumigatus; Genotype; Genotyping; Biology; Azole; Microbiology; Aspergillus; Molecular epidemiology; Antifungal; Genetics; Gene","routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004887109,0.0001949229,0.000192748,0.001097226,0.000296828,0.0005697488,0.0001943219,0.0004169523,0.0007638642],"category_scores_gemma":[0.0007419827,0.00009855866,0.0002190852,0.000665092,0.0003095419,0.0001774591,0.0002291049,0.0001577221,0.000140144],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0004994177,"about_ca_system_score_gemma":0.000347265,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.03184997,"about_ca_topic_score_gemma":0.02611365,"domain_scores_codex":[0.9995075,0.0001671422,0.00003332916,0.0001344125,0.0000781121,0.00007939336],"domain_scores_gemma":[0.9994947,0.00009573201,0.0002292015,0.00002693276,0.00009082518,0.00006267108],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.00005242823,0.00002258706,0.9897913,0.00001160022,0.00002397525,0.0001898762,0.0002792243,0.0001804022,0.004005255,0.00004416673,0.0001021055,0.005297106],"study_design_scores_gemma":[0.000002088248,0.0000860052,0.9984919,0.000005991944,0.000008436138,0.0004523414,0.0002288661,0.0001714015,0.0002223904,0.00001429964,0.0003120848,0.000004161767],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9992933,0.000212599,0.0001535912,0.00005252964,0.000001642929,0.000002956758,0.00008264671,0.000005225032,0.0001955083],"genre_scores_gemma":[0.9995733,0.00008527977,0.0001449493,0.00002182788,0.000002795605,0.000002449817,0.00009192652,9.331878e-7,0.00007665674],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.03184997,"threshold_uncertainty_score":0.06332916,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.009371238554463668,"score_gpt":0.2448461129194017,"score_spread":0.235474874364938,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}