{"id":"W3204848707","doi":"10.3390/ani11102859","title":"Species-Level Gut Microbiota Analysis after Antibiotic-Induced Dysbiosis in Horses","year":2021,"lang":"en","type":"article","venue":"Animals","topic":"Gut microbiota and health","field":"Biochemistry, Genetics and Molecular Biology","cited_by":29,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Guelph; Université de Montréal","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Firmicutes; Biology; Bacteroidetes; Gut flora; Dysbiosis; Illumina dye sequencing; Feces; Metagenomics; Microbiology; 16S ribosomal RNA; Bacteria; DNA sequencing; Zoology; Genetics; Gene; Immunology","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001554111,0.0001968537,0.0003328685,0.0001470364,0.00005451925,0.00005004829,0.0001559278,0.0002208774,0.0003368807],"category_scores_gemma":[0.00005462886,0.0002001787,0.0002276014,0.0006238881,0.00004088816,0.000003851643,0.0001551716,0.0001125018,0.00006447383],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002986753,"about_ca_system_score_gemma":0.0001488553,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000114589,"about_ca_topic_score_gemma":0.002364099,"domain_scores_codex":[0.998541,0.00009442657,0.00031548,0.0005610253,0.00008000106,0.000408082],"domain_scores_gemma":[0.9992544,0.00001094636,0.0000715523,0.0004640115,0.0001077542,0.00009135657],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.00004669441,0.00009863022,0.06965229,0.00002303945,0.0001942769,0.00004898016,0.00005456838,0.000001737011,0.9284279,0.00002386128,0.001289426,0.0001386394],"study_design_scores_gemma":[0.0002324441,0.00006702566,0.5737991,0.00001414846,0.00008505124,0.00001163129,0.00009226501,0.000002135029,0.4189428,0.000002649639,0.006575217,0.0001754895],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9967191,0.001211036,0.00003770118,0.0004487455,0.00008729164,0.0001053002,0.0001435167,0.000008942607,0.001238416],"genre_scores_gemma":[0.9958163,0.0004079331,0.000965443,0.0007876945,0.0001266758,0.000003665221,0.0001782944,0.0000216058,0.001692388],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.509485,"threshold_uncertainty_score":0.8163052,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02804745864579173,"score_gpt":0.2791813857124243,"score_spread":0.2511339270666326,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}