{"id":"W3205199278","doi":"10.1101/2021.10.21.464505","title":"Population genomics of ancient and modern <i>Trichuris trichiura</i>","year":2021,"lang":"en","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"Parasite Biology and Host Interactions","field":"Environmental Science","cited_by":3,"is_retracted":false,"has_abstract":true,"ca_institutions":"Brock University","funders":"UK Research and Innovation; Wellcome Trust","keywords":"Trichuris trichiura; Trichuris; Trichuriasis; Biology; Population genomics; Population; Genomics; Helminths; Evolutionary biology; Genome; Zoology; Ascaris lumbricoides; Genetics; Environmental health; Gene; Ascariasis; Medicine","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002529974,0.000134039,0.0001400739,0.0004836598,0.0002462436,0.0004102447,0.0001393207,0.0002511528,0.001489325],"category_scores_gemma":[0.0003807691,0.00008907184,0.0001627881,0.0004928008,0.0002487679,0.0001407485,0.0003282324,0.0002791694,0.000167733],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001809544,"about_ca_system_score_gemma":0.00009349192,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00200817,"about_ca_topic_score_gemma":0.00213891,"domain_scores_codex":[0.9998971,0.00002535338,0.000003490512,0.00004453426,0.00001283622,0.00001662382],"domain_scores_gemma":[0.9998671,0.00003317404,0.00004074589,0.00001329858,0.00002193697,0.00002367448],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.00068001,0.0001063767,0.4516883,0.0001656511,0.0004996692,0.0004218358,0.002907356,0.002039731,0.478868,0.002956777,0.001163647,0.05850266],"study_design_scores_gemma":[0.000009357985,0.0001067417,0.9919212,0.00001490487,0.00004005274,0.000307869,0.0003796688,0.0009297978,0.003041866,0.0005089124,0.002730116,0.000009526007],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9981669,0.0001409679,0.0007663501,0.00003689869,0.000002849876,0.000002377994,0.0003128484,0.000009407071,0.0005612335],"genre_scores_gemma":[0.9983463,0.0001079913,0.0006031228,0.00003496672,0.000006255667,0.000004616644,0.0005538233,0.000007476165,0.0003353857],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.00200817,"threshold_uncertainty_score":0.004982233,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01157799563180058,"score_gpt":0.2426828292092054,"score_spread":0.2311048335774048,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}