{"id":"W3205538132","doi":"10.21203/rs.3.rs-999390/v1","title":"Delta-1 variant of SARS-COV-2 acquires spike V1264L and drives the pandemic in Indonesia, Singapore and Malaysia","year":2021,"lang":"en","type":"preprint","venue":"Research Square","topic":"SARS-CoV-2 and COVID-19 Research","field":"Medicine","cited_by":10,"is_retracted":false,"has_abstract":true,"ca_institutions":"McGill University","funders":"","keywords":"Spike Protein; Pandemic; Clade; ENCODE; Spike (software development); Genome; Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2); Motif (music); Gene; Biology; Coronavirus disease 2019 (COVID-19); Evolutionary biology; Genetics; Geography; Phylogenetics; Computer science; Infectious disease (medical specialty); Disease; Medicine","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002198634,0.0002486173,0.0002241134,0.0002811133,0.0003835056,0.0005772318,0.0001770842,0.0003318492,0.00167397],"category_scores_gemma":[0.00040747,0.0001497103,0.0003487573,0.0003541695,0.0002175585,0.0003241564,0.0004303234,0.0007438837,0.0004507182],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0004790116,"about_ca_system_score_gemma":0.0004177275,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.007354444,"about_ca_topic_score_gemma":0.007075906,"domain_scores_codex":[0.9998255,0.00002828786,0.00001751083,0.00004823717,0.00002936049,0.00005114123],"domain_scores_gemma":[0.9997743,0.00002046474,0.00007094789,0.00001497601,0.00004676846,0.00007266238],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0007470974,0.0001598238,0.9307712,0.0001391641,0.0001078186,0.004161574,0.001045112,0.000826475,0.03810755,0.0004839433,0.003226599,0.02022358],"study_design_scores_gemma":[0.00002992063,0.0004225737,0.969144,0.0001120203,0.00007121635,0.008547409,0.003432535,0.001787127,0.0073153,0.000504516,0.008587399,0.00004605714],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9969462,0.0004271913,0.0001362347,0.0001829341,0.00002345144,0.00001175771,0.0004804798,0.000009640065,0.001782187],"genre_scores_gemma":[0.9978409,0.0003218459,0.0001387398,0.0001276615,0.000008064066,0.000006306403,0.0007433856,0.000005100242,0.0008078661],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.007354444,"threshold_uncertainty_score":0.01462328,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.1003266976338192,"score_gpt":0.4217765445830126,"score_spread":0.3214498469491934,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}