{"id":"W3205668829","doi":"10.1038/s41598-021-99182-3","title":"Transcriptomics of chicken cecal tonsils and intestine after infection with low pathogenic avian influenza virus H9N2","year":2021,"lang":"en","type":"article","venue":"Scientific Reports","topic":"interferon and immune responses","field":"Immunology and Microbiology","cited_by":20,"is_retracted":false,"has_abstract":true,"ca_institutions":"McGill University; University of Guelph","funders":"Ontario Veterinary College, University of Guelph; Agriculture and Agri-Food Canada; University of Guelph; Chicken Farmers of Saskatchewan; Canada First Research Excellence Fund; Natural Sciences and Engineering Research Council of Canada; Canadian Poultry Research Council","keywords":"Biology; Transcriptome; Influenza A virus subtype H5N1; Virology; Microbiology; Interferon; Virus; Ileum; Gene; Heat shock protein; Gene expression; Genetics","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00007180478,0.0001870306,0.0002108712,0.000294589,0.0002016124,0.0002833398,0.00006827439,0.0001888799,0.0006050481],"category_scores_gemma":[0.00007166195,0.0001068513,0.0002191165,0.000196059,0.0001540428,0.0001545425,0.0001456992,0.0002667189,0.0002221478],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001600933,"about_ca_system_score_gemma":0.0001366841,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00129744,"about_ca_topic_score_gemma":0.002367945,"domain_scores_codex":[0.9999442,0.000005154322,0.000002862685,0.00002169393,0.00001268447,0.00001343927],"domain_scores_gemma":[0.9999533,0.000007882563,0.00001141389,0.000002615881,0.00001357725,0.00001118739],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0002823032,0.00001032332,0.004781875,0.00009300125,0.00001281067,0.00008658862,0.00008593764,0.0000637421,0.9927616,0.00002260219,0.000075664,0.00172365],"study_design_scores_gemma":[0.00001326786,0.000436991,0.79604,0.00005118849,0.0000873552,0.000569657,0.0009989773,0.002311923,0.1951105,0.0001241764,0.004231584,0.00002451422],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9933196,0.001555008,0.001320409,0.00004547917,0.0000260076,0.00002127948,0.002633235,0.00002229526,0.001056542],"genre_scores_gemma":[0.9876297,0.001437758,0.002380403,0.0001141171,0.0000150893,0.00009146336,0.004861791,0.00002198992,0.003447662],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.00129744,"threshold_uncertainty_score":0.002579749,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.008005273121678104,"score_gpt":0.2278411677794949,"score_spread":0.2198358946578168,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}