{"id":"W3205668829","doi":"10.1038/s41598-021-99182-3","title":"Transcriptomics of chicken cecal tonsils and intestine after infection with low pathogenic avian influenza virus H9N2","year":2021,"lang":"en","type":"article","venue":"Scientific Reports","topic":"interferon and immune responses","field":"Immunology and Microbiology","cited_by":20,"is_retracted":false,"has_abstract":true,"ca_institutions":"McGill University; University of Guelph","funders":"Ontario Veterinary College, University of Guelph; Agriculture and Agri-Food Canada; University of Guelph; Chicken Farmers of Saskatchewan; Canada First Research Excellence Fund; Natural Sciences and Engineering Research Council of Canada; Canadian Poultry Research Council","keywords":"Biology; Transcriptome; Influenza A virus subtype H5N1; Virology; Microbiology; Interferon; Virus; Ileum; Gene; Heat shock protein; Gene expression; Genetics","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005102383,0.0001484703,0.0002533261,0.0001407094,0.000137418,0.00005704536,0.00004870547,0.0001341824,0.0004930199],"category_scores_gemma":[0.0001545771,0.0001199685,0.00008180603,0.0002559683,0.000562272,0.0001282486,0.00005497057,0.0001964218,0.00003146823],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002180408,"about_ca_system_score_gemma":0.0002015279,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00007537344,"about_ca_topic_score_gemma":0.0001497218,"domain_scores_codex":[0.9986423,0.0001511737,0.00044181,0.0004600766,0.00005901367,0.0002455833],"domain_scores_gemma":[0.9990687,0.000033028,0.0001673666,0.0004691961,0.0002321972,0.00002950821],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0003790737,0.0001193559,0.02098497,0.00003633617,0.00006545085,0.0001892204,0.0005302943,0.000002295061,0.975661,0.00002352762,0.0002505113,0.001757969],"study_design_scores_gemma":[0.0004334691,0.0001636292,0.06853693,0.0001334366,0.00005281804,0.003579171,0.00007379205,0.000002471869,0.9042872,0.0001358933,0.02244108,0.0001601385],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.994668,0.002230806,0.000124156,0.000033536,0.002459059,0.000142073,0.00001164874,0.00003498275,0.0002957401],"genre_scores_gemma":[0.9969869,0.00002108592,0.0001030363,0.00006926748,0.000009455128,0.00001525249,0.00004700455,0.00001259399,0.002735429],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.07137382,"threshold_uncertainty_score":0.5398222,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.008005273121678104,"score_gpt":0.2278411677794949,"score_spread":0.2198358946578168,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}