{"id":"W3206558323","doi":"","title":"Study of the Molecular Mechanism of W182 in the Bacteriorhodopsin Photocycle","year":2020,"lang":"en","type":"article","venue":"Molecular Microbiology Research","topic":"Photoreceptor and optogenetics research","field":"Neuroscience","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"","keywords":"Bacteriorhodopsin; Halobacterium salinarum; Rhodopsin; Chemistry; Proton transport; Biophysics; Halobacteriaceae; Halobacterium; Retinal; Chromophore; Proton pump; Molecular dynamics; Polyene; Transmembrane domain; Photochemistry; Biochemistry; Membrane; Biology; ATPase; Computational chemistry","routes":{"ca_aff":false,"ca_fund":false,"ca_venue":true,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001436175,0.0001469253,0.0002805154,0.0001691147,0.0001222357,0.00002575111,0.002218984,0.000118807,0.00007263075],"category_scores_gemma":[0.001045632,0.00009221211,0.0001135491,0.00154244,0.0006336102,0.00002338232,0.0009184405,0.0008037367,0.00002246084],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002987121,"about_ca_system_score_gemma":0.0001434419,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001172211,"about_ca_topic_score_gemma":0.00002774943,"domain_scores_codex":[0.9937149,0.004283756,0.0003774397,0.0005231065,0.0005351788,0.0005655885],"domain_scores_gemma":[0.99858,0.0003763883,0.00007928751,0.0007497035,0.0001449853,0.0000696679],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00009727616,0.0003736045,0.0005512822,0.00002188957,0.00001058902,0.00009112134,0.00250918,0.00002248276,0.9950614,0.001128032,0.00005006009,0.00008307937],"study_design_scores_gemma":[0.0006971511,0.0007564018,0.0004579745,0.00001106789,0.000004779855,0.00001980254,0.0009349531,0.00007089607,0.9963517,0.0003404491,0.0002730844,0.00008176121],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9962218,0.00008208462,0.00005359116,0.001121713,0.0000464092,0.001785345,0.00003127453,0.000006595531,0.000651132],"genre_scores_gemma":[0.9992891,0.00001558591,0.00002900165,0.0005288002,0.000008810857,0.00008987938,0.000001603573,0.00002145199,0.00001579504],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.004865037,"threshold_uncertainty_score":0.4123461,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.1318873023226615,"score_gpt":0.3801686707915229,"score_spread":0.2482813684688614,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}