{"id":"W3206590232","doi":"10.1101/2021.10.16.463825","title":"δ1 variant of SARS-COV-2 acquires spike V1176F and yields a highly mutated subvariant in Europe","year":2021,"lang":"en","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"SARS-CoV-2 and COVID-19 Research","field":"Medicine","cited_by":4,"is_retracted":false,"has_abstract":true,"ca_institutions":"McGill University; McGill University Health Centre","funders":"Natural Sciences and Engineering Research Council of Canada; Canadian Institutes of Health Research; Università di Bologna; Compute Canada","keywords":"Spike (software development); Pandemic; Lineage (genetic); Genome; Heptad repeat; Biology; Substitution (logic); Mutation; Gene; Genetics; Virus; Phenotype; Computational biology; Coronavirus disease 2019 (COVID-19); Evolutionary biology; Virology; Computer science; Medicine; Peptide sequence; Disease","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001636288,0.0002677247,0.0002793462,0.0004219764,0.0002560296,0.0004821699,0.0001767982,0.0004034119,0.0009059514],"category_scores_gemma":[0.0002675751,0.0001027767,0.000471144,0.0003792949,0.0001296072,0.0001729938,0.000281681,0.0003554537,0.0003918621],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002816874,"about_ca_system_score_gemma":0.0001676211,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002952513,"about_ca_topic_score_gemma":0.001665072,"domain_scores_codex":[0.9997942,0.00002199505,0.00002377048,0.00006357574,0.00003997305,0.00005657727],"domain_scores_gemma":[0.9998677,0.00001359711,0.0000372332,0.00001716559,0.00003448352,0.00002992043],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.001617423,0.0003396445,0.3177839,0.0001231401,0.0002987891,0.01088416,0.000535994,0.00207868,0.6280619,0.0009737714,0.002434648,0.03486791],"study_design_scores_gemma":[0.0001194176,0.001087468,0.7799038,0.00007737539,0.0001526798,0.04141898,0.001124176,0.003389199,0.1520262,0.0006439607,0.01999042,0.00006639054],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9980265,0.0002430377,0.0003840173,0.00003695607,0.00001755508,0.000008637277,0.0003815753,0.00001133853,0.0008902886],"genre_scores_gemma":[0.9966344,0.0001922692,0.0005705807,0.00009123973,0.000009204179,0.000005373995,0.001546429,0.00001271703,0.0009377538],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.002952513,"threshold_uncertainty_score":0.00587064,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03500721927531763,"score_gpt":0.2895189031492568,"score_spread":0.2545116838739392,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}