{"id":"W3206679606","doi":"10.1101/2021.10.11.463729","title":"Deep Learning Genome-wide Linkage Association Study for Wheat Fusarium Head Blight Resistance Genes Discovery","year":2021,"lang":"en","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"Mycotoxins in Agriculture and Food","field":"Agricultural and Biological Sciences","cited_by":2,"is_retracted":false,"has_abstract":true,"ca_institutions":"Agriculture and Agri-Food Canada","funders":"Agriculture and Agri-Food Canada","keywords":"Biology; Candidate gene; Quantitative trait locus; Genetics; Genetic linkage; Gene; Population; Fusarium; Linkage (software); Genome; Plant disease resistance; Medicine","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001614124,0.0004559552,0.0005628161,0.001184248,0.0004683693,0.000650499,0.0006447054,0.0005315163,0.001296884],"category_scores_gemma":[0.001634676,0.0001837348,0.0009352436,0.001098364,0.0002386525,0.0002400896,0.0008275573,0.0007850769,0.0002746036],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0004899395,"about_ca_system_score_gemma":0.001021335,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.007846106,"about_ca_topic_score_gemma":0.01088271,"domain_scores_codex":[0.999522,0.0001209827,0.00002199951,0.0001729366,0.00006534215,0.00009677586],"domain_scores_gemma":[0.9991683,0.0003653761,0.0001027397,0.0001127479,0.0001452671,0.000105508],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"simulation_or_modeling","study_design_scores_codex":[0.001210844,0.001144209,0.5166424,0.0004188091,0.002460381,0.001024167,0.0003028157,0.05952296,0.07788295,0.003870581,0.01446356,0.3210563],"study_design_scores_gemma":[0.0001856824,0.0003661358,0.2928743,0.00007387769,0.0008730398,0.0005024789,0.0003306518,0.6736168,0.01165465,0.009338169,0.01011311,0.00007102689],"study_design_candidate":"simulation_or_modeling","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.8674713,0.001870168,0.1189755,0.00131123,0.000108054,0.00007366275,0.007247601,0.001141293,0.001801129],"genre_scores_gemma":[0.9538912,0.0003991655,0.0339053,0.0003115524,0.00005668804,0.0001054841,0.009552225,0.00005959878,0.001718679],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.007846106,"threshold_uncertainty_score":0.01560092,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01382365528147892,"score_gpt":0.2088296081272489,"score_spread":0.19500595284577,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}