{"id":"W3207065929","doi":"10.3390/microorganisms9102124","title":"Transcriptome Analysis of Environmental Pseudomonas Isolates Reveals Mechanisms of Biodegradation of Naphthenic Acid Fraction Compounds (NAFCs) in Oil Sands Tailings","year":2021,"lang":"en","type":"article","venue":"Microorganisms","topic":"Petroleum Processing and Analysis","field":"Chemistry","cited_by":6,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Saskatchewan; Environment and Climate Change Canada; University of British Columbia","funders":"Natural Sciences and Engineering Research Council of Canada; Genome British Columbia","keywords":"Pseudomonas putida; Tailings; Biodegradation; Pseudomonas; Microorganism; Transcriptome; Degradation (telecommunications); Oil sands; Microbial biodegradation; Naphthenic acid; Bacteria; Chemistry; Enrichment culture; Enzyme; Biology; Gene; Food science; Biochemistry; Microbiology; Gene expression; Materials science; Genetics; Organic chemistry","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0002441451,0.0002067824,0.0007874633,0.0004110493,0.00005082397,0.00001685002,0.0002075648,0.0001960518,0.001081395],"category_scores_gemma":[0.00002623955,0.0002193566,0.0003773564,0.001112198,0.0001017507,0.0001354241,0.00003689041,0.000171737,0.000002584547],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001048848,"about_ca_system_score_gemma":0.00005534427,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001066205,"about_ca_topic_score_gemma":0.00003887689,"domain_scores_codex":[0.9982541,0.00005013515,0.000835662,0.000371249,0.0002848138,0.0002039973],"domain_scores_gemma":[0.9989418,0.00005048963,0.0005354346,0.0003535113,0.00007069274,0.00004800678],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00004415632,0.0003983331,0.005439474,0.0001812431,0.0007895385,0.000003357495,0.0005376583,0.00004801259,0.9909123,0.00002631145,0.000003351121,0.001616257],"study_design_scores_gemma":[0.000617122,0.00002653001,0.001102984,0.00009943716,0.001229943,0.000006514493,0.001371186,0.0004669286,0.9945711,0.000295892,0.00003361734,0.0001787042],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9960462,0.001081417,0.002201952,0.00006147037,0.0000202346,0.000005594028,0.0002097761,0.00001826901,0.0003551],"genre_scores_gemma":[0.9966009,0.0002689938,0.001802042,0.00002127086,0.00001083208,0.000002983867,0.0004070901,0.00002350752,0.0008623742],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.00433649,"threshold_uncertainty_score":0.9998317,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.006606282297210113,"score_gpt":0.2130826621274998,"score_spread":0.2064763798302897,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}