{"id":"W3207313894","doi":"10.1158/0008-5472.can-21-2056","title":"Reorganization of the 3D Genome Pinpoints Noncoding Drivers of Primary Prostate Tumors","year":2021,"lang":"en","type":"article","venue":"Cancer Research","topic":"Genomics and Chromatin Dynamics","field":"Biochemistry, Genetics and Molecular Biology","cited_by":17,"is_retracted":false,"has_abstract":true,"ca_institutions":"Princess Margaret Cancer Centre; Ontario Institute for Cancer Research; University of Toronto; University Health Network","funders":"Canadian Institutes of Health Research; University of Toronto; Government of Ontario; Prostate Cancer Foundation; Ontario Institute for Cancer Research; Movember Foundation; Princess Margaret Cancer Foundation","keywords":"Genome; Prostate cancer; Chromatin; Gene; Prostate; Chromoplexy; Concordance; Genome instability","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00007129184,0.0001600784,0.000153064,0.0005064824,0.000166169,0.0004209386,0.000136327,0.0001941319,0.002679907],"category_scores_gemma":[0.0001510666,0.0001851624,0.000176702,0.0002458584,0.000277577,0.0001463371,0.0003573949,0.0003664809,0.0005368154],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003160883,"about_ca_system_score_gemma":0.000151939,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001006149,"about_ca_topic_score_gemma":0.001748361,"domain_scores_codex":[0.9998894,0.000009530274,0.000003685081,0.00003363761,0.00003782317,0.00002600329],"domain_scores_gemma":[0.9998497,0.00002580498,0.00005111394,0.00002874117,0.0000148293,0.00002987253],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00005588362,0.000008313538,0.002508864,0.00003090726,0.000008480185,0.0001322826,0.00003018452,0.0002965904,0.9941322,0.0003875518,0.00007612853,0.002332482],"study_design_scores_gemma":[0.00000715161,0.0001349685,0.1198945,0.00001017253,0.00003252009,0.002104799,0.0001418087,0.003982406,0.8672457,0.0007628799,0.005664281,0.00001881085],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.981662,0.001201869,0.01383398,0.0000802385,0.00002544818,0.00001887503,0.0006222313,0.0003067341,0.00224871],"genre_scores_gemma":[0.9966663,0.0002139318,0.001811537,0.00002449036,0.0000042374,0.000007457892,0.0002529838,0.0000318557,0.0009871743],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.002679907,"threshold_uncertainty_score":0.008965194,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.0182453697963166,"score_gpt":0.2929603629220849,"score_spread":0.2747149931257684,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}