{"id":"W3207569082","doi":"10.1038/s41523-021-00345-2","title":"Breast Cancer Consensus Subtypes: A system for subtyping breast cancer tumors based on gene expression","year":2021,"lang":"en","type":"article","venue":"npj Breast Cancer","topic":"Breast Cancer Treatment Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":64,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"BC Cancer Agency; Cancer Research UK","keywords":"Subtyping; Breast cancer; Stromal cell; Cancer research; Oncology; Medicine; Lymphocytic infiltration; Androgen receptor; Estrogen receptor; Internal medicine; Pathology; Biology; Cancer; Prostate cancer","routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.004100513,0.001044648,0.001262734,0.00941544,0.00125213,0.001839125,0.001273601,0.0006005066,0.005159339],"category_scores_gemma":[0.01180663,0.0004423399,0.001606451,0.005998137,0.0003682116,0.0006749507,0.001795815,0.001115447,0.00312936],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.001616362,"about_ca_system_score_gemma":0.003366942,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.01381312,"about_ca_topic_score_gemma":0.01872533,"domain_scores_codex":[0.9962336,0.0006534926,0.0009156964,0.0007134477,0.001132336,0.0003513584],"domain_scores_gemma":[0.9927649,0.001789076,0.001432579,0.001327567,0.002242516,0.0004433751],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.002823888,0.0002347896,0.5308155,0.00147612,0.001292178,0.0005285785,0.001062837,0.003915977,0.02830521,0.006665044,0.09188654,0.3309934],"study_design_scores_gemma":[0.0006230578,0.0006761745,0.6709641,0.0007004518,0.001147042,0.004283682,0.001483043,0.04307461,0.02615676,0.01558587,0.2350655,0.0002398053],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.4133339,0.005295738,0.3237265,0.001486344,0.0007106113,0.005673184,0.1987498,0.01944212,0.03158181],"genre_scores_gemma":[0.370307,0.001035366,0.461283,0.0005149189,0.0001951043,0.004015202,0.1511682,0.002753553,0.00872769],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.01381312,"threshold_uncertainty_score":0.0274654,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01155565826883234,"score_gpt":0.2640670857993745,"score_spread":0.2525114275305422,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}