{"id":"W3207672631","doi":"10.1093/nar/gkab957","title":"webTWAS: a resource for disease candidate susceptibility genes identified by transcriptome-wide association study","year":2021,"lang":"en","type":"article","venue":"Nucleic Acids Research","topic":"Genetic Associations and Epidemiology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":366,"is_retracted":false,"has_abstract":true,"ca_institutions":"McGill University; Alberta Children's Hospital; University of Calgary","funders":"National Natural Science Foundation of China","keywords":"Genome-wide association study; Biology; Software; Computational biology; Genetic association; Computer science; Data science; Gene; Genetics; Single-nucleotide polymorphism; Genotype","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.003535541,0.0001668941,0.0002697134,0.00006815788,0.0004458606,0.00008999856,0.0003264851,0.000236568,0.0001104519],"category_scores_gemma":[0.004417762,0.0001720003,0.000175582,0.0002865254,0.00008740647,0.000006726001,0.000184336,0.0002364952,0.00002661764],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001871998,"about_ca_system_score_gemma":0.0003207886,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001042605,"about_ca_topic_score_gemma":0.0005373913,"domain_scores_codex":[0.9963571,0.001232095,0.0004032994,0.0007882101,0.0004995092,0.0007197534],"domain_scores_gemma":[0.9978365,0.0003889058,0.0001007618,0.0006762949,0.0007490029,0.0002485794],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0001954013,0.0004610958,0.7114126,0.00003086387,0.0001659513,0.000004439441,0.0001818674,0.00001561955,0.126156,0.000007332371,0.1600563,0.001312579],"study_design_scores_gemma":[0.002704961,0.000740272,0.5476151,0.00001311664,0.00009884153,9.151204e-7,0.003542223,0.0002658434,0.01137513,0.0006654795,0.4325539,0.0004242025],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9928675,0.001320718,0.001097642,0.00309504,0.0001270305,0.0007985295,0.0003077159,0.00001949528,0.0003662946],"genre_scores_gemma":[0.984067,0.0002291913,0.0002998633,0.0003746579,0.0002164415,0.000263913,0.0008202554,0.00003746906,0.01369119],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.2724977,"threshold_uncertainty_score":0.7013968,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03305318693027964,"score_gpt":0.3478255143038149,"score_spread":0.3147723273735352,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}