{"id":"W3207983804","doi":"10.1016/j.jgar.2021.10.006","title":"Draft genome sequence of Staphylococcus agnetis 4244, a strain with gene clusters encoding distinct post-translationally modified antimicrobial peptides","year":2021,"lang":"en","type":"article","venue":"Journal of Global Antimicrobial Resistance","topic":"Probiotics and Fermented Foods","field":"Agricultural and Biological Sciences","cited_by":3,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Alberta","funders":"Natural Sciences and Engineering Research Council of Canada; Universidade Federal do Rio de Janeiro; Conselho Nacional de Desenvolvimento Científico e Tecnológico; Coordenação de Aperfeiçoamento de Pessoal de Nível Superior; Norges Miljø- og Biovitenskapelige Universitet; University of Alberta","keywords":"Biology; Genome; Staphylococcus aureus; Microbiology; Whole genome sequencing; Gene; Bacteriocin; Antibiotic resistance; Genetics; Antimicrobial; Antibiotics; Bacteria","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002937028,0.0002597352,0.0004840432,0.00002181027,0.0001933107,0.0001204769,0.0004453279,0.0001235202,0.00004519341],"category_scores_gemma":[0.0000583288,0.0001281747,0.0002719374,0.0005615414,0.0002473214,0.0002360744,0.00007129896,0.0002210466,0.000001744573],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000127538,"about_ca_system_score_gemma":0.0002313357,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00004900367,"about_ca_topic_score_gemma":0.001708405,"domain_scores_codex":[0.9979696,0.0001122133,0.0007665598,0.0003267143,0.0004175039,0.0004073695],"domain_scores_gemma":[0.9981459,0.00007720208,0.0006869317,0.00009399712,0.0008350369,0.000160913],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0007721214,0.0001947592,0.001582406,0.0000675037,0.0001005967,0.0002042376,0.00006005108,0.000417762,0.9955172,0.0002104055,0.0001609118,0.0007120366],"study_design_scores_gemma":[0.00572255,0.00334003,0.6715665,0.003267269,0.000563452,0.001870577,0.0007147694,0.0001320087,0.3007108,0.0009692758,0.008818583,0.002324245],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9926527,0.0004036505,0.0003044122,0.002406006,0.0001728796,0.0001624705,0.003309807,0.00001326546,0.0005748827],"genre_scores_gemma":[0.9951735,0.0001585339,0.003924421,0.0003008707,0.0001841741,6.505846e-7,0.0001423302,0.000002908541,0.0001126252],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.6948064,"threshold_uncertainty_score":0.5226814,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01452640081576748,"score_gpt":0.2231569305663783,"score_spread":0.2086305297506109,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}