{"id":"W3208129421","doi":"10.1186/s13223-021-00617-3","title":"Neonatal abstinence syndrome is a potential cause of low TREC copy number","year":2021,"lang":"en","type":"letter","venue":"Allergy Asthma and Clinical Immunology","topic":"Immunodeficiency and Autoimmune Disorders","field":"Immunology and Microbiology","cited_by":3,"is_retracted":false,"has_abstract":true,"ca_institutions":"Children's Hospital of Eastern Ontario; McMaster Children's Hospital; Newborn Screening Ontario; University of Alberta; McMaster University","funders":"","keywords":"False positive paradox; Abstinence; Severe combined immunodeficiency; Medicine; Copy-number variation; Biology; Pediatrics; Genetics; Psychiatry; Gene; Genome; Computer science","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":true,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow","sts","research_integrity","insufficient_payload"],"consensus_categories":["research_integrity","insufficient_payload"],"category_scores_codex":[0.0004337963,0.0008110781,0.002016784,0.0001723494,0.0003184163,0.0000370038,0.0009864231,0.004520311,0.008418766],"category_scores_gemma":[0.0002521689,0.0007822544,0.00088346,0.0002789193,0.002926876,0.0001424242,0.0007074416,0.004602888,0.001115247],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00003016397,"about_ca_system_score_gemma":0.0003728126,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0004725425,"about_ca_topic_score_gemma":0.00001468881,"domain_scores_codex":[0.9943039,0.001004126,0.002050383,0.001362362,0.000137725,0.001141523],"domain_scores_gemma":[0.9967049,0.0008275234,0.0009388879,0.001214789,0.0002935236,0.00002031561],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","study_design_scores_codex":[0.002960874,0.003694267,0.002374805,0.0008513505,0.04268373,0.01313934,0.002366902,0.00001217278,0.01529203,0.001134281,0.7845727,0.1309176],"study_design_scores_gemma":[0.004175054,0.0008615087,0.01204645,0.0003964415,0.0002316058,0.005240141,0.0004057175,0.000006399153,0.00118518,0.0002423807,0.9741367,0.001072454],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.6816429,0.1729448,0.0002419229,0.1284917,0.01327253,0.0007257385,0.0005761415,0.0002472677,0.001856965],"genre_scores_gemma":[0.7594445,0.02459668,0.0001082232,0.1740288,0.0002033981,0.00008827383,0.004558018,0.0002255955,0.03674654],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.189564,"threshold_uncertainty_score":0.9997866,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01249919766613704,"score_gpt":0.2662922787841529,"score_spread":0.2537930811180159,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}