{"id":"W3208229326","doi":"10.3389/fvets.2021.742345","title":"Serotypes, Virulence-Associated Factors, and Antimicrobial Resistance of Streptococcus suis Isolates Recovered From Sick and Healthy Pigs Determined by Whole-Genome Sequencing","year":2021,"lang":"en","type":"article","venue":"Frontiers in Veterinary Science","topic":"Streptococcal Infections and Treatments","field":"Medicine","cited_by":33,"is_retracted":false,"has_abstract":true,"ca_institutions":"Université de Montréal; University of Guelph","funders":"Ministry of Agriculture, Food and Rural Affairs; Ontario Ministry of Agriculture, Food and Rural Affairs; Swine Innovation Porc; Canada First Research Excellence Fund; University of Guelph","keywords":"Streptococcus suis; Biology; Serotype; Virulence; Microbiology; Gene; Virology; Genetics","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001679881,0.0001899562,0.0004212071,0.0001881695,0.0001818373,0.00004985526,0.00009742715,0.0000909581,0.00001982062],"category_scores_gemma":[0.0001723303,0.0001772506,0.0000409472,0.0007029161,0.000451619,0.0003207159,0.000105525,0.0001422732,7.450799e-7],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003274503,"about_ca_system_score_gemma":0.0003344039,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0004708598,"about_ca_topic_score_gemma":0.00006530536,"domain_scores_codex":[0.998528,0.00006890791,0.0003298442,0.0005731229,0.0001618164,0.0003382786],"domain_scores_gemma":[0.9992471,0.00007110681,0.0001528596,0.0002617209,0.0001019525,0.000165237],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0001448929,0.0000953182,0.5043734,0.00004203864,0.00002817328,0.00005710895,0.000282543,0.000001165846,0.494465,0.000001226849,0.0001478912,0.0003612605],"study_design_scores_gemma":[0.003443666,0.002123255,0.9614945,0.0007266329,0.0000764282,0.00004734814,0.0008375411,0.0005751282,0.02885551,0.0002370903,0.001169183,0.0004137128],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.997177,0.001167873,0.0001130337,0.0001039131,0.0003049029,0.0003559011,0.0006603647,0.00002473544,0.00009225787],"genre_scores_gemma":[0.9952437,0.0003215986,0.003903651,0.00006439671,0.00001309457,0.00001098383,0.000152178,0.00001184964,0.0002784973],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.4656095,"threshold_uncertainty_score":0.7228069,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02279808818443109,"score_gpt":0.2693677432501063,"score_spread":0.2465696550656752,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}