{"id":"W3208590696","doi":"10.1038/s41587-021-01058-4","title":"Population genomic analysis of Aegilops tauschii identifies targets for bread wheat improvement","year":2021,"lang":"en","type":"article","venue":"Nature Biotechnology","topic":"Wheat and Barley Genetics and Pathology","field":"Agricultural and Biological Sciences","cited_by":287,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Saskatchewan; University of British Columbia","funders":"Department of Plant Sciences, University of California, Davis; Agricultural Research Service; National Institute of Food and Agriculture; Directorate for Biological Sciences; Saskatchewan Wheat Development Commission; Deutsches Zentrum für integrative Biodiversitätsforschung Halle-Jena-Leipzig; Universität Zürich; Punjab Agricultural University; Kementerian Riset, Teknologi dan Pendidikan Tinggi; Nanjing Agricultural University; Sichuan Agricultural University; Tel Aviv University; Ilam University; University of British Columbia; Instituto Nacional de Investigación Agropecuaria; Aarhus Universitet; John Innes Foundation; OeAD-GmbH; Chinese Academy of Agricultural Sciences; Innovationsfonden; U.S. Department of Agriculture; Schweizerischer Nationalfonds zur Förderung der Wissenschaftlichen Forschung; King Saud University; Leibniz-Gemeinschaft; Research Councils UK; University of California, Davis; ACT Government; National Natural Science Foundation of China; National Science Foundation; UK Research and Innovation; University of Minnesota; King Abdullah University of Science and Technology; Department of Biotechnology, Ministry of Science and Technology, India; International Center for Agricultural Research in the Dry Areas; European Commission; Università di Bologna; Kansas Wheat Commission; Biotechnology and Biological Sciences Research Council; Jewish National Fund; Fulbright Association; Ministry of Agriculture - Saskatchewan; ASEAN-European Academic University Network; Universitas Gadjah Mada; Instituto Nacional de Investigación y Tecnología Agraria y Alimentaria; Österreichische Agentur für Internationale Mobilität und Kooperation in Bildung, Wissenschaft und Forschung; Consejo Nacional de Ciencia y Tecnología; Universität für Bodenkultur Wien; Royal Society","keywords":"Aegilops tauschii; Biology; Aegilops; Population; Genetics; Biotechnology; Gene; Genome; Medicine","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001252346,0.0001118034,0.0003136364,0.00007000165,0.0001000569,0.0000146377,0.0001752055,0.0007870531,0.0001231216],"category_scores_gemma":[0.00005174242,0.00005095062,0.00019827,0.000655263,0.00005113803,0.00002063317,0.00008626382,0.0001882302,0.000001972465],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001633151,"about_ca_system_score_gemma":0.000006873045,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00008541604,"about_ca_topic_score_gemma":0.001909589,"domain_scores_codex":[0.9990996,0.00002312207,0.0002386612,0.0003404888,0.00008380628,0.0002143844],"domain_scores_gemma":[0.9995822,0.00006052372,0.0001040678,0.0001070707,0.0001184407,0.00002766225],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00001762219,0.00004484662,0.002279592,0.000007543545,0.0001352109,0.00000233978,0.000009233108,0.000006385683,0.9547835,0.002420958,0.0002076354,0.04008514],"study_design_scores_gemma":[0.0001795414,0.0003497085,0.1903704,0.00000584863,0.0003580639,0.000006463736,0.000113919,0.0001515393,0.788542,0.00358393,0.01614939,0.0001892475],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.992623,0.002734143,0.00008085173,0.003765301,0.00034582,0.00015101,0.00020682,0.00004140524,0.00005169176],"genre_scores_gemma":[0.9977106,0.0002402639,0.0007337483,0.000213418,0.00009929748,0.00001347609,0.0007874372,0.00000102904,0.0002007715],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.1880908,"threshold_uncertainty_score":0.6070474,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.008140407058569344,"score_gpt":0.2326295475740512,"score_spread":0.2244891405154819,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}