{"id":"W3208670523","doi":"10.3390/genes12111727","title":"Whole Genome DNA Methylation Variations in Mammary Gland Tissues from Holstein Cattle Producing Milk with Various Fat and Protein Contents","year":2021,"lang":"en","type":"article","venue":"Genes","topic":"Epigenetics and DNA Methylation","field":"Biochemistry, Genetics and Molecular Biology","cited_by":15,"is_retracted":false,"has_abstract":true,"ca_institutions":"McGill University; Agriculture and Agri-Food Canada","funders":"China Scholarship Council; Agriculture and Agri-Food Canada; Government of Canada","keywords":"DNA methylation; Quantitative trait locus; Methylation; Gene; Biology; Genetics; Gene expression","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00009712118,0.000119663,0.0001318813,0.00004030262,0.00006717927,0.0000569092,0.00006365316,0.0001008623,0.00000663921],"category_scores_gemma":[0.00005140554,0.000113516,0.00001905853,0.0001060538,0.00002300441,0.000009930331,0.00007364518,0.00005019284,0.000002638778],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001241486,"about_ca_system_score_gemma":0.00005114956,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0002611392,"about_ca_topic_score_gemma":0.0009620695,"domain_scores_codex":[0.9990903,0.00009286192,0.0001708899,0.0004001505,0.0001006509,0.0001452098],"domain_scores_gemma":[0.9994935,0.00001146856,0.00006779568,0.0002779264,0.0001025307,0.00004675437],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00002145882,0.00003590992,0.01207478,0.00001394115,0.00003360808,0.000008822504,0.0002520245,0.0001587311,0.9833187,0.00002157532,0.000004479024,0.004055965],"study_design_scores_gemma":[0.0006425329,0.0001008533,0.1166916,0.00002219442,0.00001845995,0.000003116691,0.00005382629,0.00008694745,0.8751021,0.0004981889,0.006604343,0.0001759101],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9772374,0.01406794,0.007932462,0.0002623732,0.00004890273,0.0002740545,0.00004992494,0.000008522627,0.0001184305],"genre_scores_gemma":[0.9883497,0.0003663863,0.00940072,0.00003246198,0.000149839,0.00004775092,0.0008546238,0.00001810876,0.0007803934],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.1082166,"threshold_uncertainty_score":0.4629048,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01303448784969168,"score_gpt":0.2346480459683204,"score_spread":0.2216135581186287,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}