{"id":"W3208670523","doi":"10.3390/genes12111727","title":"Whole Genome DNA Methylation Variations in Mammary Gland Tissues from Holstein Cattle Producing Milk with Various Fat and Protein Contents","year":2021,"lang":"en","type":"article","venue":"Genes","topic":"Epigenetics and DNA Methylation","field":"Biochemistry, Genetics and Molecular Biology","cited_by":15,"is_retracted":false,"has_abstract":true,"ca_institutions":"McGill University; Agriculture and Agri-Food Canada","funders":"China Scholarship Council; Agriculture and Agri-Food Canada; Government of Canada","keywords":"DNA methylation; Quantitative trait locus; Methylation; Gene; Biology; Genetics; Gene expression","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000116394,0.0001232284,0.0001961744,0.0005602754,0.0001720755,0.0002378354,0.0001047515,0.0001863105,0.001024769],"category_scores_gemma":[0.0001292341,0.0001185869,0.0001739598,0.0003568997,0.0001292075,0.00005854362,0.0001457711,0.000153499,0.0001114901],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002028854,"about_ca_system_score_gemma":0.000109073,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.006561184,"about_ca_topic_score_gemma":0.01092922,"domain_scores_codex":[0.9999019,0.000009080297,0.000004862475,0.00003945682,0.00001728261,0.0000273925],"domain_scores_gemma":[0.9999313,0.00001696898,0.00002172219,0.000003832729,0.000009363222,0.00001678331],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.001017668,0.00003113796,0.2444139,0.00004709329,0.0001390726,0.0001541713,0.0004148108,0.00009300564,0.7450528,0.00003195386,0.00008003271,0.008524387],"study_design_scores_gemma":[0.000003754524,0.00008092631,0.9937491,0.000002338679,0.0000451228,0.0001293162,0.0001534093,0.0001432222,0.005462511,0.000009449582,0.0002185265,0.000002169289],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9993615,0.0001166864,0.0001340836,0.000005792097,6.366681e-7,0.000001192035,0.0002715458,0.000002483943,0.0001061574],"genre_scores_gemma":[0.9975885,0.0001247791,0.0003854511,0.00002585999,0.000002053783,0.00000761797,0.001084624,0.000004352153,0.0007767851],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.006561184,"threshold_uncertainty_score":0.01304603,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01303448784969168,"score_gpt":0.2346480459683204,"score_spread":0.2216135581186287,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}