{"id":"W3208730021","doi":"10.1128/jcm.01659-21","title":"Clinical and Infection Prevention Applications of Severe Acute Respiratory Syndrome Coronavirus 2 Genotyping: an Infectious Diseases Society of America/American Society for Microbiology Consensus Review Document","year":2021,"lang":"en","type":"review","venue":"Journal of Clinical Microbiology","topic":"SARS-CoV-2 and COVID-19 Research","field":"Medicine","cited_by":17,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Calgary; University of British Columbia; Providence Health Care","funders":"Centers for Disease Control and Prevention","keywords":"Genotyping; Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2); Coronavirus; Virology; Coronavirus disease 2019 (COVID-19); Medicine; Clinical microbiology; Biology; Immunology; Genotype; Infectious disease (medical specialty); Disease; Genetics; Gene; Microbiology; Internal medicine","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.002066784,0.0007280809,0.001621473,0.0032135,0.0002910014,0.001466699,0.00108328,0.001558805,0.004283149],"category_scores_gemma":[0.002996585,0.0003188006,0.001256663,0.002359537,0.0003778552,0.001311623,0.0007602579,0.001835453,0.00252793],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0008755603,"about_ca_system_score_gemma":0.004005477,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001908233,"about_ca_topic_score_gemma":0.002946566,"domain_scores_codex":[0.9993574,0.00013539,0.0001345254,0.00007722338,0.0002528587,0.00004270341],"domain_scores_gemma":[0.9982505,0.0007424853,0.0002151576,0.00003440412,0.0006701805,0.00008720856],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0000599689,0.0000445938,0.0001527487,0.03123566,0.0001400222,0.00008371159,0.00005442586,0.0001523238,0.0006532781,0.002227653,0.06862775,0.8965679],"study_design_scores_gemma":[0.00001966705,0.00007355738,0.0005737198,0.01954776,0.0002644247,0.0004706095,0.00005313968,0.00005089907,0.0002473836,0.0008121808,0.9778706,0.00001609258],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.00005658854,0.9969207,0.0001220746,0.001054897,0.0005265154,0.00001736954,0.00005090771,0.000009476676,0.001241577],"genre_scores_gemma":[0.0002832317,0.9983102,0.0002773745,0.0004993284,0.0001581287,0.00001521554,0.00005850784,0.000002233997,0.0003957055],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.004283149,"threshold_uncertainty_score":0.0143286,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.1407201432431768,"score_gpt":0.5192430227912248,"score_spread":0.378522879548048,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}