{"id":"W3209019359","doi":"10.3389/fcimb.2021.718840","title":"Genomic Determinants of Pathogenicity and Antimicrobial Resistance for 60 Global Listeria monocytogenes Isolates Responsible for Invasive Infections","year":2021,"lang":"en","type":"article","venue":"Frontiers in Cellular and Infection Microbiology","topic":"Listeria monocytogenes in Food Safety","field":"Biochemistry, Genetics and Molecular Biology","cited_by":35,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"National Key Research and Development Program of China; Natural Science Foundation of Zhejiang Province; National Natural Science Foundation of China; European Commission","keywords":"Listeria monocytogenes; Biology; Virulence; Microbiology; Pathogenicity island; Listeria; Antibiotic resistance; Lineage (genetic); Listeria infection; Serotype; Drug resistance; Gene; Antibiotics; Virology; Genetics; Bacteria","routes":{"ca_aff":false,"ca_fund":false,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002365843,0.0001964691,0.0003634146,0.00007344464,0.0001380179,0.00002143407,0.00007643682,0.0003302229,0.000001974372],"category_scores_gemma":[0.0001735058,0.0002213373,0.0001205341,0.0001090206,0.0002172253,0.00001179631,0.0001850494,0.00004890801,1.95601e-7],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00005153813,"about_ca_system_score_gemma":0.0001956529,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00002577778,"about_ca_topic_score_gemma":0.0009938269,"domain_scores_codex":[0.9986498,0.000147646,0.0003968694,0.0005261614,0.0000143229,0.0002651905],"domain_scores_gemma":[0.9993503,0.00004022241,0.0001728792,0.0002384556,0.0001526238,0.00004550076],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0007062213,0.0000623965,0.1741506,0.0001885595,0.00006340196,0.000001742031,0.00003014992,0.00001930308,0.8236665,0.00002362539,0.0006725647,0.0004150261],"study_design_scores_gemma":[0.001757985,0.0004037686,0.008277339,0.0000341414,0.00005890237,0.0001036446,0.00003636086,0.00004106971,0.974083,0.0004211676,0.01454003,0.0002426126],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9676261,0.003487547,0.02652199,0.0000365146,0.001059224,0.0004916164,0.0007465618,0.00000792088,0.00002250099],"genre_scores_gemma":[0.9824036,0.001933607,0.01478855,0.0001111102,0.000114869,0.00007150571,0.0003928999,0.00002301519,0.0001608639],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.1658732,"threshold_uncertainty_score":0.9025872,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02582825314204586,"score_gpt":0.280959499978428,"score_spread":0.2551312468363822,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}