{"id":"W3209019359","doi":"10.3389/fcimb.2021.718840","title":"Genomic Determinants of Pathogenicity and Antimicrobial Resistance for 60 Global Listeria monocytogenes Isolates Responsible for Invasive Infections","year":2021,"lang":"en","type":"article","venue":"Frontiers in Cellular and Infection Microbiology","topic":"Listeria monocytogenes in Food Safety","field":"Biochemistry, Genetics and Molecular Biology","cited_by":35,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"National Key Research and Development Program of China; Natural Science Foundation of Zhejiang Province; National Natural Science Foundation of China; European Commission","keywords":"Listeria monocytogenes; Biology; Virulence; Microbiology; Pathogenicity island; Listeria; Antibiotic resistance; Lineage (genetic); Listeria infection; Serotype; Drug resistance; Gene; Antibiotics; Virology; Genetics; Bacteria","routes":{"ca_aff":false,"ca_fund":false,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001459455,0.0003743432,0.0002605138,0.001182685,0.0002888291,0.000421459,0.0001800067,0.000254418,0.0006483476],"category_scores_gemma":[0.0005095344,0.0001816556,0.000373931,0.001182377,0.0002832002,0.0001145182,0.0004536512,0.0002288804,0.0001616029],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002154821,"about_ca_system_score_gemma":0.0002524477,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.005112037,"about_ca_topic_score_gemma":0.004293413,"domain_scores_codex":[0.9998092,0.00001688053,0.0000248252,0.00006543177,0.00003277708,0.00005099594],"domain_scores_gemma":[0.9996988,0.00005720106,0.00008685051,0.00003629124,0.0000621756,0.00005868803],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0007571805,0.0001005717,0.4789766,0.0001293979,0.0001648505,0.0008501024,0.001568099,0.0003016011,0.5054598,0.0000796316,0.0001372988,0.01147469],"study_design_scores_gemma":[0.000009491336,0.0001813258,0.9923571,0.000009315731,0.00008897695,0.0007459889,0.0005580845,0.0001421316,0.005302632,0.00001839982,0.0005790297,0.000007425392],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9992824,0.0000733483,0.00007338539,0.000006711599,0.000001515684,0.000006325151,0.000379785,0.0000024779,0.0001740223],"genre_scores_gemma":[0.9971434,0.0001116676,0.0002838005,0.00002657863,0.000004601167,0.0000124598,0.002232548,0.000004301199,0.0001805881],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.005112037,"threshold_uncertainty_score":0.01016456,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02582825314204586,"score_gpt":0.280959499978428,"score_spread":0.2551312468363822,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}