{"id":"W3209125666","doi":"10.1016/j.tranon.2021.101256","title":"Predominance of genomically defined A lineage of HPV16 over D lineage in Indian patients from eastern India with squamous cell carcinoma of the cervix in association with distinct oncogenic phenotypes","year":2021,"lang":"en","type":"article","venue":"Translational Oncology","topic":"Cervical Cancer and HPV Research","field":"Medicine","cited_by":5,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of British Columbia","funders":"State Grid Corporation of China; University Grants Commission","keywords":"Lineage (genetic); Biology; Phenotype; Gene; Cervix; Infectivity; Allele; Genome; Virology; Genetics; Virus; Cancer","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001565864,0.0001088182,0.0004714214,0.00009356047,0.00001303802,0.000002093945,0.0001091008,0.0001557766,0.0004020984],"category_scores_gemma":[0.00008015706,0.00007755369,0.00007066016,0.0004081979,0.00009755246,0.00003688157,0.00002659746,0.0002715156,0.00000131609],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002304247,"about_ca_system_score_gemma":0.001162441,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001258503,"about_ca_topic_score_gemma":0.01578886,"domain_scores_codex":[0.9984871,0.000162666,0.0005152666,0.0002133984,0.0004445594,0.0001770126],"domain_scores_gemma":[0.9986387,0.0005591914,0.000283293,0.0001670987,0.0003029379,0.00004880958],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.003935328,0.001049766,0.9889427,0.0001841447,0.0000317746,0.00002058321,0.001822416,0.0001673624,0.001870755,0.00002880412,0.000003167916,0.001943195],"study_design_scores_gemma":[0.01137292,0.000928951,0.9738733,0.00004216276,0.00006983877,8.268335e-7,0.00005753145,0.0002651963,0.01322761,0.00004324327,0.00004869015,0.00006973463],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9970291,0.000228934,0.00004120573,0.0002193836,0.00003071909,0.0004151694,0.0002232177,0.000002145952,0.001810132],"genre_scores_gemma":[0.9990157,0.000005065103,0.0006416452,0.00005983441,0.00003892343,0.00001868592,0.0001479632,0.00001443082,0.00005772059],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.01506941,"threshold_uncertainty_score":0.8810556,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01084118634346861,"score_gpt":0.2583155886075654,"score_spread":0.2474744022640968,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}