{"id":"W3209125666","doi":"10.1016/j.tranon.2021.101256","title":"Predominance of genomically defined A lineage of HPV16 over D lineage in Indian patients from eastern India with squamous cell carcinoma of the cervix in association with distinct oncogenic phenotypes","year":2021,"lang":"en","type":"article","venue":"Translational Oncology","topic":"Cervical Cancer and HPV Research","field":"Medicine","cited_by":5,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of British Columbia","funders":"State Grid Corporation of China; University Grants Commission","keywords":"Lineage (genetic); Biology; Phenotype; Gene; Cervix; Infectivity; Allele; Genome; Virology; Genetics; Virus; Cancer","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001272641,0.0001938474,0.0002034561,0.0008672771,0.0008215079,0.0006921224,0.0002830607,0.0003224153,0.001418954],"category_scores_gemma":[0.0007296615,0.0002866693,0.0002257441,0.0009657563,0.0004479786,0.0002404642,0.000384857,0.0003507902,0.0002022623],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002439075,"about_ca_system_score_gemma":0.0004335947,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.01043674,"about_ca_topic_score_gemma":0.01189862,"domain_scores_codex":[0.9997736,0.0000306253,0.00002684691,0.00008319408,0.00002660605,0.00005920818],"domain_scores_gemma":[0.9995857,0.00008936851,0.0001320908,0.0000469303,0.00005223026,0.00009362981],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.00006845995,0.00001267682,0.9969894,0.000009983932,0.000009510549,0.000575884,0.000305175,0.00001954872,0.0009356621,0.00001696535,0.00004834998,0.001008253],"study_design_scores_gemma":[0.000003963558,0.00008103633,0.9933895,0.000007439784,0.00003030787,0.004518538,0.001329794,0.0001080341,0.0002474649,0.00003557296,0.0002420496,0.000006352512],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9995607,0.000058987,0.00003504674,0.00001400691,0.000001632951,0.000005010463,0.00005254499,0.000002970204,0.000269003],"genre_scores_gemma":[0.9998071,0.00004050294,0.00002225142,0.00001408215,0.000002533433,0.000002020143,0.00005739158,9.705026e-7,0.00005331693],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.01043674,"threshold_uncertainty_score":0.02075201,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01084118634346861,"score_gpt":0.2583155886075654,"score_spread":0.2474744022640968,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}