{"id":"W3209267706","doi":"10.1001/jamaoncol.2021.5153","title":"Implications of Selection Bias Due to Delayed Study Entry in Clinical Genomic Studies","year":2021,"lang":"en","type":"article","venue":"JAMA Oncology","topic":"Genetic Associations and Epidemiology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":50,"is_retracted":false,"has_abstract":true,"ca_institutions":"Princess Margaret Cancer Centre","funders":"National Cancer Institute","keywords":"Medicine; Milestone; Truncation (statistics); Lung cancer; Data set; Cancer; Survival analysis; Oncology; Internal medicine; Statistics","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001087058,0.00009416925,0.0004039525,0.00006139863,0.00004666986,0.000003740822,0.0001172606,0.0002659904,0.00002644027],"category_scores_gemma":[0.002036703,0.00009538898,0.00008704345,0.0002228149,0.00004980336,0.000001602445,0.0001952878,0.000134179,0.0000126843],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00008860022,"about_ca_system_score_gemma":0.0003268313,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00007275819,"about_ca_topic_score_gemma":0.004237174,"domain_scores_codex":[0.9979044,0.0007950646,0.0006775381,0.0003711944,0.00004185448,0.0002100073],"domain_scores_gemma":[0.9989434,0.0002543158,0.0001919803,0.000255403,0.000295,0.00005988576],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.00009923638,0.0008728832,0.9162363,0.000005138225,0.0002803457,0.000007718999,0.0003152366,0.0004649154,0.04771138,0.00008768431,0.00865756,0.02526161],"study_design_scores_gemma":[0.000938836,0.001506997,0.9802385,0.000002659249,0.00003734929,0.00003137664,0.001519564,0.00002236312,0.001198668,0.0002495242,0.01416555,0.00008860383],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9943045,0.0005435545,0.0005138402,0.003201408,0.0002353009,0.0002711175,0.00001287893,0.00000515402,0.0009122189],"genre_scores_gemma":[0.994658,0.0004489241,0.003055487,0.001226341,0.000212694,0.00009361258,0.00004186422,0.000009612731,0.0002534442],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.06400222,"threshold_uncertainty_score":0.3889849,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.07599562025519879,"score_gpt":0.4181746053724671,"score_spread":0.3421789851172684,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}