{"id":"W3209302925","doi":"10.1164/rccm.202103-0569oc","title":"Lung Microenvironments and Disease Progression in Fibrotic Hypersensitivity Pneumonitis","year":2021,"lang":"en","type":"article","venue":"American Journal of Respiratory and Critical Care Medicine","topic":"Interstitial Lung Diseases and Idiopathic Pulmonary Fibrosis","field":"Medicine","cited_by":36,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of British Columbia","funders":"National Center for Advancing Translational Sciences; National Heart, Lung, and Blood Institute; Canadian Institutes of Health Research; National Institutes of Health; Stichting Tegen Kanker; Fonds Wetenschappelijk Onderzoek; Fonds De La Recherche Scientifique - FNRS; Michael Smith Health Research BC; U.S. National Library of Medicine; Providence Health Care; AstraZeneca; Veracyte; KU Leuven; Francis Family Foundation; U.S. Department of Defense","keywords":"Hypersensitivity pneumonitis; Transcriptome; Idiopathic pulmonary fibrosis; Lung; Extracellular matrix; Fibrosis; Pulmonary fibrosis; Disease","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002602455,0.0001706362,0.000187794,0.0006249174,0.000172044,0.0004255173,0.0000964408,0.0002412441,0.0006591882],"category_scores_gemma":[0.0003301962,0.0000909779,0.0001282267,0.0003528392,0.0002938596,0.0002014743,0.0002105232,0.0002578623,0.0001040578],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001675149,"about_ca_system_score_gemma":0.0001081566,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0003627882,"about_ca_topic_score_gemma":0.0004572871,"domain_scores_codex":[0.9998471,0.00003972689,0.00001154754,0.00004914826,0.00002989229,0.0000225758],"domain_scores_gemma":[0.9996448,0.00005549266,0.0001848255,0.00002143783,0.00003303313,0.00006051459],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.001148625,0.0001216602,0.6210881,0.0001299059,0.00007329058,0.0005932174,0.0001413667,0.0003873779,0.3676266,0.0001170575,0.0001138988,0.008458961],"study_design_scores_gemma":[0.000005998513,0.0002146294,0.9861035,0.000007012223,0.0000226407,0.0008975671,0.0001116457,0.0006940108,0.01166197,0.00009439591,0.0001821482,0.000004389095],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9989881,0.000440464,0.0003103088,0.00001327573,0.000001652214,0.000007739352,0.0001083365,0.00000612773,0.0001239391],"genre_scores_gemma":[0.9994816,0.00009554197,0.0002255167,0.000008423876,0.000003317458,0.000005327037,0.0001115858,0.000001026302,0.00006767824],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.0006591882,"threshold_uncertainty_score":0.002205253,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.009841540469996048,"score_gpt":0.3003101043239187,"score_spread":0.2904685638539227,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}